no, that should be fine On Tue, 4 Sep 2012, Borzello, Mia wrote: > I'm using Unix. Should I try something else? > > Thanks, > m > ________________________________________ > From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] > Sent: Monday, September 03, 2012 2:45 PM > To: Borzello, Mia > Cc: freesurfer > Subject: Re: [Freesurfer] creating a skull > > Hi Mia > > what platform are you running on? > > Bruce > On Fri, 31 Aug 2012, Borzello, Mia wrote: > >> I've been referred to the following link on the freesurfer site to handle >> this, but is this still current (i.e. is linux still needed to do this?): >> http://mailman.science.ru.nl/pipermail/fieldtrip/2012-January/004679.html >> >> thanks, >> m >> ________________________________________ >> From: Louis Nicholas Vinke [vi...@nmr.mgh.harvard.edu] >> Sent: Friday, August 31, 2012 10:29 AM >> To: Borzello, Mia >> Cc: freesurfer >> Subject: Re: [Freesurfer] creating a skull >> >> Hi, >> You need to add an extension onto the file name, something like brain.mgz >> or brain.nii. The extension will tell it what format to save the output >> in. >> -Louis >> >> On Fri, 31 Aug 2012, Borzello, Mia wrote: >> >>> Hi freesurfer family, >>> >>> I am trying to create the inner skull boundary and ran: mri_watershed >>> -atlas - surf -useSRAS mri.nii brain >>> >>> However, after it finished running it said it was saving "brain", but >>> "brain" was an unknown file type. Am i supposed to specify that somewhere? >>> >>> Thanks in advance, >>> m >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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