did you try using freeview? For example: freeview -v brain.mgz
On Fri, 31 Aug 2012, Borzello, Mia wrote: > Hi, > > I make it an mgz. When trying to load (tried using a load and read command) > to make sure it looks okay, but it's not working. How can I view this mgz > file or ascertain that it has an error? > > Thanks, > m > ________________________________________ > From: Louis Nicholas Vinke [vi...@nmr.mgh.harvard.edu] > Sent: Friday, August 31, 2012 10:29 AM > To: Borzello, Mia > Cc: freesurfer > Subject: Re: [Freesurfer] creating a skull > > Hi, > You need to add an extension onto the file name, something like brain.mgz > or brain.nii. The extension will tell it what format to save the output > in. > -Louis > > On Fri, 31 Aug 2012, Borzello, Mia wrote: > >> Hi freesurfer family, >> >> I am trying to create the inner skull boundary and ran: mri_watershed -atlas >> - surf -useSRAS mri.nii brain >> >> However, after it finished running it said it was saving "brain", but >> "brain" was an unknown file type. Am i supposed to specify that somewhere? >> >> Thanks in advance, >> m >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
