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If I loaded the label to the inflated surface, it also gives me the cluster
with branches. As you can see in the below.
If I loaded the annot file to the inflated surface, it works well. Thanks for
your help.
Ting
> On Oct 16, 2018, at 1:51 PM
Hmm, not sure what to tell you. The label is derived directly from the
annot. If you click on a vertex in the branch, does it appear to be in
the label based on what displays in the control panel? If you load it on
the inflated surface, do you still see the branch?
On 10/15/2018 08:42 PM, Ting
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The annot file loaded successfully and without any branches. Thanks a lot.
Ting
> On Oct 15, 2018, at 2:22 PM, Greve, Douglas N.,Ph.D.
> wrote:
>
> Click on the surface file name in the upper left corner of FreeView,
> then load the Annotation from
Click on the surface file name in the upper left corner of FreeView,
then load the Annotation from the panel just below it. It does not make
sense that you would see the branches on the folded surface but not on
the inflated.
On 10/15/2018 03:06 PM, Ting Li wrote:
>
> External Email - U
yes, that is fine
On 10/11/18 11:21 PM, Ting Li wrote:
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Dear Dr. Douglas,
Thank you so much for your response. With your instruction, it works. This is
how I did.
First, copy the significant cluster annot file from the simulation fold to one
of subject lab
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Dear Dr. Douglas,
Thank you so much for your response. With your instruction, it works. This is
how I did.
First, copy the significant cluster annot file from the simulation fold to one
of subject label folder.
Secondly, use the mir_annotation2labe
Which subject did you load it on? It must be fsaverage. Can you send the
terminal output and command line?
On 10/03/2018 11:31 PM, Ting Li wrote:
>
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>
> Dear Freesurfer Expert,
>
> I have figured out the problem is that I didn’t specify lh before the
> annot
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Dear Freesurfer Expert,
I have figured out the problem is that I didn’t specify lh before the annot
file. However, in this method, I didn’t get the right label for I have loaded
the label into the subject file. It is the scatter points.
I want to c
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I have also tried the command without annot in specifying the annotation file.
Thanks a lot.
Regards,
Ting
> On Oct 3, 2018, at 9:36 PM, Ting Li wrote:
>
> Dear Freesurfer Experts,
>
> I really need your attention and help. Thanks a lot.
>
> We w
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Dear Freesurfer Experts,
I really need your attention and help. Thanks a lot.
We want to create label through the mri_glm-fit-sim cluster results.
We have found the same topic in 2013 and tried the method you have provided.
However, it doesn’t work
Sorry Doug,
I don't understand, I just have the cluster.mgh file with the MonteCarlo
simulation results, is an .mgh file with a big significant cluster (
mc-z.abs.sig.cluster.mgh).
Is there a way to create a label for each of the significant clusters?
thanks again and sorry if the question is too
Thanks Doug!
Could you give me an example please? I cannot get it to work, with this
command I get a zero label...
mri_annotation2label --subject fsaverage --hemi lh --annotation
lh.mc-z.abs.sig.cluster.mgh --labelbase lh.mc_mycluster
thanks again!
Gari
On Thu, Aug 15, 2013 at 4:44 PM, Dougla
Hi Gari, you can use mri_annotation2label
doug
On 8/14/13 3:00 PM, Garikoitz Lerma-Usabiaga wrote:
Hi list,
we have a cluster that survived the Monte Carlo simulation for
thickness, and we would like to obtain more data from that exact
cluster (volume for example), is it possible to automatic
Hi list,
we have a cluster that survived the Monte Carlo simulation for thickness,
and we would like to obtain more data from that exact cluster (volume for
example), is it possible to automatically create a label from that cluster?
If I use mri_binarize or mri_cor2label is not working (I understa
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