Thanks Doug! Could you give me an example please? I cannot get it to work, with this command I get a zero label...
mri_annotation2label --subject fsaverage --hemi lh --annotation lh.mc-z.abs.sig.cluster.mgh --labelbase lh.mc_mycluster thanks again! Gari On Thu, Aug 15, 2013 at 4:44 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu>wrote: > > Hi Gari, you can use mri_annotation2label > doug > > > On 8/14/13 3:00 PM, Garikoitz Lerma-Usabiaga wrote: > > Hi list, > we have a cluster that survived the Monte Carlo simulation for thickness, > and we would like to obtain more data from that exact cluster (volume for > example), is it possible to automatically create a label from that cluster? > > If I use mri_binarize or mri_cor2label is not working (I understand that > the clusters are not stored as individual vertexes in the .mgh file but I > don't know what the format is. > > Thanks in advance! > Gari > > PD: I am on a VPN and tksurfer is not working for manually creating a > label with the contour of the cluster. > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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