Sorry Doug, I don't understand, I just have the cluster.mgh file with the MonteCarlo simulation results, is an .mgh file with a big significant cluster ( mc-z.abs.sig.cluster.mgh).
Is there a way to create a label for each of the significant clusters? thanks again and sorry if the question is too trivial! Gari On Thu, Aug 15, 2013 at 7:32 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > Give it the annotation (.annot) file > > > > > > On 08/15/2013 01:26 PM, Garikoitz Lerma-Usabiaga wrote: > >> Thanks Doug! >> Could you give me an example please? I cannot get it to work, with this >> command I get a zero label... >> >> mri_annotation2label --subject fsaverage --hemi lh --annotation >> lh.mc-z.abs.sig.cluster.mgh --labelbase lh.mc_mycluster >> >> thanks again! >> Gari >> >> >> >> On Thu, Aug 15, 2013 at 4:44 PM, Douglas Greve >> <gr...@nmr.mgh.harvard.edu<mailto: >> gr...@nmr.mgh.harvard.**edu <gr...@nmr.mgh.harvard.edu>>> wrote: >> >> >> Hi Gari, you can use mri_annotation2label >> doug >> >> >> On 8/14/13 3:00 PM, Garikoitz Lerma-Usabiaga wrote: >> >>> Hi list, >>> we have a cluster that survived the Monte Carlo simulation for >>> thickness, and we would like to obtain more data from that exact >>> cluster (volume for example), is it possible to automatically >>> create a label from that cluster? >>> >>> If I use mri_binarize or mri_cor2label is not working (I >>> understand that the clusters are not stored as individual >>> vertexes in the .mgh file but I don't know what the format is. >>> >>> Thanks in advance! >>> Gari >>> >>> PD: I am on a VPN and tksurfer is not working for manually >>> creating a label with the contour of the cluster. >>> >>> >>> ______________________________**_________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:freesur...@nmr.mgh.** >>> harvard.edu <Freesurfer@nmr.mgh.harvard.edu>> >>> >>> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:freesur...@nmr.mgh.** >> harvard.edu <Freesurfer@nmr.mgh.harvard.edu>> >> >> >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: > surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: > https://gate.nmr.mgh.harvard.**edu/filedrop2<https://gate.nmr.mgh.harvard.edu/filedrop2> > www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/** > greve/ <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > >
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