Re: [Freesurfer] Wm segmentation problem

2011-06-06 Thread Irene Altarelli
Dear Khoa and Bruce, thanks for replying so fast. The wm.mgz does not look correct either. I have uploaded the subject using the second option. Thanks again, Irene Le lundi 06 juin 2011 à 07:46 -0400, Khoa Nguyen a écrit : > Hi Irene, > > Is the wm segmentation correct in the wm.mgz? If you wa

Re: [Freesurfer] Wm segmentation problem

2011-06-06 Thread Bruce Fischl
Hmmm, that does look strange. What does the wm.mgz look like there? On Jun 6, 2011, at 4:12 AM, Irene Altarelli wrote: > Dear Freesurfers, > > we are processing a dataset of children through recon-all, applying > manual corrections when needed. > > For one subject, after manual correction a

Re: [Freesurfer] Wm segmentation problem

2011-06-06 Thread Khoa Nguyen
Hi Irene, Is the wm segmentation correct in the wm.mgz? If you want, you can upload the subject and I can take a look. You can try using this website http://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange If that doesn't work, try this one https://www.nmr.mgh.harvard.edu/facility/filedrop/ind

[Freesurfer] Wm segmentation problem

2011-06-06 Thread Irene Altarelli
Dear Freesurfers, we are processing a dataset of children through recon-all, applying manual corrections when needed. For one subject, after manual correction and running autorecon2-cp, we observe errors in wm segmentation, bilaterally, with portions of gm included in wm - as can be seen in the