Dear Khoa and Bruce, thanks for replying so fast. The wm.mgz does not look correct either.
I have uploaded the subject using the second option. Thanks again, Irene Le lundi 06 juin 2011 à 07:46 -0400, Khoa Nguyen a écrit : > Hi Irene, > > Is the wm segmentation correct in the wm.mgz? If you want, you can upload > the subject and I can take a look. > > You can try using this website > http://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange > > If that doesn't work, try this one > https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > -Khoa > > On Mon, 6 Jun 2011, Irene Altarelli wrote: > > > Dear Freesurfers, > > > > we are processing a dataset of children through recon-all, applying > > manual corrections when needed. > > > > For one subject, after manual correction and running autorecon2-cp, we > > observe errors in wm segmentation, bilaterally, with portions of gm > > included in wm - as can be seen in the attached picture. This concerns > > most of the coronal slices. We have been checking that control points > > were not misplaced and they look ok to us. > > > > What do you think is happening there and is there anything we can try > > before manually correcting these errors? > > > > Thanks very much in advance, > > Irene > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Irene Altarelli Laboratoire de Sciences Cognitives et Psycholinguistique Ecole Normale Supérieure 29, rue d'Ulm 75005 Paris tel. +33 (0)1 44 32 26 23 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
