Hi Irene, Is the wm segmentation correct in the wm.mgz? If you want, you can upload the subject and I can take a look.
You can try using this website http://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange If that doesn't work, try this one https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html -Khoa On Mon, 6 Jun 2011, Irene Altarelli wrote: > Dear Freesurfers, > > we are processing a dataset of children through recon-all, applying > manual corrections when needed. > > For one subject, after manual correction and running autorecon2-cp, we > observe errors in wm segmentation, bilaterally, with portions of gm > included in wm - as can be seen in the attached picture. This concerns > most of the coronal slices. We have been checking that control points > were not misplaced and they look ok to us. > > What do you think is happening there and is there anything we can try > before manually correcting these errors? > > Thanks very much in advance, > Irene > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
