Re: [Freesurfer] WM parcelleted boundary

2010-12-15 Thread Bruce Fischl
> > > > -Original Message- > From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Sent: Wed 12/15/2010 11:05 AM > To: Ingalhalikar, Madhura > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: RE: [Freesurfer] WM parcelleted boundary > > Hi Madhura, > > I'm not

Re: [Freesurfer] WM parcelleted boundary

2010-12-15 Thread Bruce Fischl
now, > > Thanks for your response. > Madhura > > -Original Message- > From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Sent: Wed 12/15/2010 11:05 AM > To: Ingalhalikar, Madhura > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: RE: [Freesurfer] WM parcelle

Re: [Freesurfer] WM parcelleted boundary

2010-12-15 Thread Ingalhalikar, Madhura
voxel as output. else, Output is 0. I hope it makes sense, Madhura -Original Message- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Wed 12/15/2010 11:05 AM To: Ingalhalikar, Madhura Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] WM parcelleted boundary

Re: [Freesurfer] WM parcelleted boundary

2010-12-15 Thread Ingalhalikar, Madhura
: Ingalhalikar, Madhura Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] WM parcelleted boundary Hi Madhura, I'm not sure I understand. The ?h.white is the boundary. If you want to create a voxel representation of it you can use mris_fill cheers Bruce On Wed, 15 Dec 2010, Ingalha

Re: [Freesurfer] WM parcelleted boundary

2010-12-15 Thread Bruce Fischl
-- > From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Sent: Fri 12/10/2010 8:13 PM > To: Ingalhalikar, Madhura > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] WM parcelleted boundary > > Hi Madhura, > > have you looked at the wmparc.mgz? It migh

Re: [Freesurfer] WM parcelleted boundary

2010-12-15 Thread Ingalhalikar, Madhura
, Madhura -Original Message- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Fri 12/10/2010 8:13 PM To: Ingalhalikar, Madhura Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] WM parcelleted boundary Hi Madhura, have you looked at the wmparc.mgz? It might be

Re: [Freesurfer] WM parcelleted boundary

2010-12-10 Thread Bruce Fischl
Hi Madhura, have you looked at the wmparc.mgz? It might be exactly what you want Bruce On Fri, 10 Dec 2010, Ingalhalikar, Madhura wrote: > Hi, > > Is there a way to get the cortical parcellations projected onto the WM > boundary? I need to seed the boundary of the cortical ROI ( in WM) for f

Re: [Freesurfer] WM parcelleted boundary

2010-12-10 Thread Allison Stevens
Would the wmparc.mgz work for this? It should be in the mri dir. -- On Fri, 10 Dec 2010, Ingalhalikar, Madhura wrote: > Hi, > > Is there a way to get the cortical parcellations projected onto the WM > boundary? I need to seed the boundary of the cortical ROI ( in WM) for fiber > tracking. > P

[Freesurfer] WM parcelleted boundary

2010-12-10 Thread Ingalhalikar, Madhura
Hi, Is there a way to get the cortical parcellations projected onto the WM boundary? I need to seed the boundary of the cortical ROI ( in WM) for fiber tracking. Please let me know, Thank you, Madhura The information contained in this e-mail message is intended only for the personal and