Bruce, I agree that ?h.white is a boundary. But it is labeled based on cortical labels? If yes, that is exactly what I need. Let me know,
Thanks for your response. Madhura -----Original Message----- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Wed 12/15/2010 11:05 AM To: Ingalhalikar, Madhura Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] WM parcelleted boundary Hi Madhura, I'm not sure I understand. The ?h.white is the boundary. If you want to create a voxel representation of it you can use mris_fill cheers Bruce On Wed, 15 Dec 2010, Ingalhalikar, Madhura wrote: > Bruce and Allison, > Thanks for your prompt reply. For me wmparc.mgz is not entirely the correct > solution. I just need the labeled WM boundary (ribbon) to seed my fiber > tracking. So basically I will have to compute the boundary from wmparc.mgz. > Is there anything that does that already? > Thanks, > Madhura > > > -----Original Message----- > From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] > Sent: Fri 12/10/2010 8:13 PM > To: Ingalhalikar, Madhura > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] WM parcelleted boundary > > Hi Madhura, > > have you looked at the wmparc.mgz? It might be exactly what you want > > Bruce > > On > Fri, 10 Dec 2010, Ingalhalikar, Madhura wrote: > >> Hi, >> >> Is there a way to get the cortical parcellations projected onto the WM >> boundary? I need to seed the boundary of the cortical ROI ( in WM) for fiber >> tracking. >> Please let me know, >> >> Thank you, >> Madhura >> >> >> The information contained in this e-mail message is intended only for the >> personal and confidential use of the recipient(s) named above. If the reader >> of this message is not the intended recipient or an agent responsible for >> delivering it to the intended recipient, you are hereby notified that you >> have received this document in error and that any review, dissemination, >> distribution, or copying of this message is strictly prohibited. If you have >> received this communication in error, please notify us immediately by >> e-mail, and delete the original message. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > > The information contained in this e-mail message is intended only for the > personal and confidential use of the recipient(s) named above. If the reader > of this message is not the intended recipient or an agent responsible for > delivering it to the intended recipient, you are hereby notified that you > have received this document in error and that any review, dissemination, > distribution, or copying of this message is strictly prohibited. If you have > received this communication in error, please notify us immediately by e-mail, > and delete the original message. > > > The information contained in this e-mail message is intended only for the personal and confidential use of the recipient(s) named above. If the reader of this message is not the intended recipient or an agent responsible for delivering it to the intended recipient, you are hereby notified that you have received this document in error and that any review, dissemination, distribution, or copying of this message is strictly prohibited. If you have received this communication in error, please notify us immediately by e-mail, and delete the original message. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
