you can use mri_surf2surf, using the XYZ (--sval-xyz) as input, applying
a transformation --reg, and spec XYZ as an output (--tval-xyz). You will
need a registration matrix to map it from the surf coordinates to
whatever coordinates slicer uses.
doug
On 02/19/2013 06:05 AM, Efrat Kliper wrote:
Hi Efrat
Does it look ok in tkmedit or freeview?
Cheers
Bruce
On Feb 19, 2013, at 6:05 AM, Efrat Kliper wrote:
> Dear freesurfer expert,
>
> We have preformed the full autorecon command using freesurfer and want to
> view the results in Slicer,
> When we load the pial surface onto slicer it
Dear freesurfer expert,
We have preformed the full autorecon command using freesurfer and want to
view the results in Slicer,
When we load the pial surface onto slicer it doesn't seem to be coregister
to the original MR image,
how can we bring back the surface to the original native space or
alter
Hi Joost, try using mri_surf2surf, something like
mri_surf2surf --sval-xyz lh.pial --reg register.dat --tval
lh.pial.native --tval-xyz --hemi lh --subject subject
The register.dat you can get from
tkregister2 --mov orig.mgz --targ rawavg.mgz --regheader --no-edit --reg
register.dat
doug
On
Hi,
FS version 4.5
- goal: to transfer the ?h.pial to native ('pre-conformed') space.
thus to the space of the image _before_ any FS processing.
- what we have done so far:
1) if we convert the T1.mgz (from the FS mri-dir, mri_convert T1.mgz
T1.nii) to nifti it coincides perfectly with the nativ
