Hi,
FS version 4.5
- goal: to transfer the ?h.pial to native ('pre-conformed') space.
thus to the space of the image _before_ any FS processing.
- what we have done so far:
1) if we convert the T1.mgz (from the FS mri-dir, mri_convert T1.mgz
T1.nii) to nifti it coincides perfectly with the native space image.
2) if we then overlay the ?h.pial over the T1.nii it does _not_ match,
i.e. it looks like mri_convert includes a translation that shifts the
surface with respect to the volume.
question: how can we achieve our goal, i.e. get the surface in native
space (a perfect overlap with T1.nii)?
thanks,
-joost
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