Look here, example #9
http://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems
On 3/14/19 5:01 AM, Tim Hahn wrote:
> External Email - Use Caution
>
> Dear Freesurfer experts,
>
> as far as I understand, Freesurfer employs the Desikan-Killiany Atlas
> (by default) to compute the various
External Email - Use Caution
Dear Freesurfer experts,
as far as I understand, Freesurfer employs the Desikan-Killiany Atlas
(by default) to compute the various parameters based on the aseg and
aparc files. For my analysis, I now need the Desikan-Killiany Atlas ROI
mask(s) (cort
yes, they are based on different atlases. You can look at the original
papers (Rahul Desikan's is one and Christophe Destriuex's is the other)
to see the differences. Or you can load the various .annot files in
freeview on the inflated surface to see them visually
cheers
Bruce
On Fri, 27 May 2
Hi Bruce,
Thanks for the fast response! I indeed found them in other stats files.
What is the difference between these files? I assume they are based on
different atlases? I saw that there are some slight differences between the
numbers in different files for the same structures, so how do I know
it depends what they are. You can look in the other stats files to see if
they are there (we include a couple of cortical parcellations). If they
aren't, you can draw them yourself on fsaverage and map them to all your
subjects using our spherical transform
cheers
Bruce
On Fri, 27 May 2016, Ma
Hi Bruce,
Thanks, that indeed includes most of the roi's I want to include. What if
there are some area's that are not in that list? Is there a way of adding
areas?
Best,
Marja
On Fri, May 27, 2016 at 10:26 PM, Bruce Fischl
wrote:
> Hi Marja
>
> what ROI do you mean? We generate lots of them,
Hi Marja
what ROI do you mean? We generate lots of them, and tabulate the
thickness within each one. Look for example in id>/stats/aparc.stats
cheers
Bruce
On Fri, 27 May 2016, Marja Caverlé wrote:
Hi all,
So I ran a recon-all -all on one of my subjects, and it completed without
errors (acc
Hi all,
So I ran a recon-all -all on one of my subjects, and it completed without
errors (according to the log). Now I would like to get cortical thickness
numbers from this subject, but when I open the tutorial regarding this, it
says it assumes that you already have a roi mask and a T1 in the sa
Hi all,
I am currently exploring anatomical ROI analysis in FreeSurfer. I would
like to create ROIs based on a Brodmann Area atlas, since unfortunately
FreeSurfer currently only segments a few of these regions automatically.
I know I could define the ROI manually in FreeSurfer, but I would pref
