yes, they are based on different atlases. You can look at the original
papers (Rahul Desikan's is one and Christophe Destriuex's is the other)
to see the differences. Or you can load the various .annot files in
freeview on the inflated surface to see them visually
cheers
Bruce
On Fri, 27 May 2016,
Marja Caverlé wrote:
Hi Bruce,
Thanks for the fast response! I indeed found them in other stats files. What
is the difference between these files? I assume they are based on different
atlases? I saw that there are some slight differences between the numbers in
different files for the same structures, so how do I know which file I
should use?
Thank you so much for your help!
Best,
Marja
On Fri, May 27, 2016 at 11:00 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
it depends what they are. You can look in the other stats files
to see if they are there (we include a couple of cortical
parcellations). If they aren't, you can draw them yourself on
fsaverage and map them to all your subjects using our spherical
transform
cheers
Bruce
On Fri, 27 May 2016, Marja Caverlé wrote:
Hi Bruce,
Thanks, that indeed includes most of the roi's I
want to include. What if
there are some area's that are not in that list? Is
there a way of adding
areas?
Best,
Marja
On Fri, May 27, 2016 at 10:26 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
wrote:
Hi Marja
what ROI do you mean? We generate lots of
them, and tabulate the
thickness within each one. Look for example in
<subject
id>/stats/aparc.stats
cheers
Bruce
On Fri, 27 May 2016, Marja Caverlé wrote:
Hi all,
So I ran a recon-all -all on one of my
subjects, and
it completed without
errors (according to the log). Now I
would like to
get cortical thickness
numbers from this subject, but when I
open the
tutorial regarding this, it
says it assumes that you already have a
roi mask and
a T1 in the same
coordinate space as the roi mask.
Did the recon -all -all by any chance
create these
files? And if not, how
can I?
So basically the question is; what do I
have to do
after recon -all -all in
order to get cortical thickness numbers
in roi's of
my subjects?
Thanks in advance.
Marja
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