it depends what they are. You can look in the other stats files to see if
they are there (we include a couple of cortical parcellations). If they
aren't, you can draw them yourself on fsaverage and map them to all your
subjects using our spherical transform
cheers
Bruce
On Fri, 27 May 2016, Marja Caverlé wrote:
Hi Bruce,
Thanks, that indeed includes most of the roi's I want to include. What if
there are some area's that are not in that list? Is there a way of adding
areas?
Best,
Marja
On Fri, May 27, 2016 at 10:26 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Marja
what ROI do you mean? We generate lots of them, and tabulate the
thickness within each one. Look for example in <subject
id>/stats/aparc.stats
cheers
Bruce
On Fri, 27 May 2016, Marja Caverlé wrote:
Hi all,
So I ran a recon-all -all on one of my subjects, and
it completed without
errors (according to the log). Now I would like to
get cortical thickness
numbers from this subject, but when I open the
tutorial regarding this, it
says it assumes that you already have a roi mask and
a T1 in the same
coordinate space as the roi mask.
Did the recon -all -all by any chance create these
files? And if not, how
can I?
So basically the question is; what do I have to do
after recon -all -all in
order to get cortical thickness numbers in roi's of
my subjects?
Thanks in advance.
Marja
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