Re: [Freesurfer] Question concerning orientation

2006-07-17 Thread Doug Greve
When reporting a bug or a problem, you should follow the instructions in surfer.nmr.mgh.harvard.edu/fswiki/BugReporting thanks doug Jake Freimer wrote: I have run several instances of autorecon2 and have only got left hemisphere data. The log file says that autorecon finished with errors

Re: [Freesurfer] Question concerning orientation

2006-07-17 Thread Nick Schmansky
Can you send the recon-all.log file? I can examine it for error messages. Also, do the input files contain orientation info? run this on your subject input volume: mri_info 001.mgz and send me the output. On Mon, 2006-07-17 at 13:58 -0700, Jake Freimer wrote: > I have run several instances

[Freesurfer] Question concerning orientation

2006-07-17 Thread Jake Freimer
I have run several instances of autorecon2 and have only got left hemisphere data. The log file says that autorecon finished with errors but I can not find where to find these errors. I believe that the problem is the way the data being fed in is oriented so I was wondering how I should reorient i