[Freesurfer] Question concerning orientation

[Jake Freimer]

I have run several instances of autorecon2 and have only got left
hemisphere data. The log file says that autorecon finished with errors
but I can not find where to find these errors. I believe that the
problem is the way the data being fed in is oriented so I was
wondering how I should reorient it to get it to work.
Thanks
Jake
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