/
From: "Hoopes, Andrew"
Date: Tuesday, 8 May 2018 at 16:27
To: "Iglesias Gonzalez, Eugenio" , Freesurfer support
list
Subject: Re: [Freesurfer] Longitudinal hippocampal subfields analysis problem
I’m not sure. How long do these runs usually take Eugenio? I’m noticing th
.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
From: on behalf of Tamir Eisenstein
Reply-To: Freesurfer support list
Date: Sunday, 6 May 2018 at 08:22
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: [Freesurfer] Longitudinal hippocampal subfields analysis problem
External Ema
Tamir Eisenstein
Reply-To: Freesurfer support list
Date: Sunday, 6 May 2018 at 08:22
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: [Freesurfer] Longitudinal hippocampal subfields analysis problem
External Email - Use Caution
Hi FreeSurfer experts,
I've tr
External Email - Use Caution
Hi FreeSurfer experts,
I've tried running the longHippoSubfieldsT1.sh command on a subject with 2
time points on FS 6.0, and it seemed working well while running.
However, after about 10 hours of processing it "ended" with the following
message, and no
Hi Manuel,
smoothing is usually only necessary for surface data.
You should have crated the subfields on top of the longitudinal directories, so:
> recon-all -long -hippocampal-subfields-T1
>
Else they will only be available in the cross dirs. The longs will have better
reliability.
Best
Dear all,
I set out to perform a longitudinal analysis of hippocampal subfields. I
have already edited the cross and/or the bases when necessary and obtained
the longs.
Then I have obtained the hippocampal subfields by the automated pipeline:
recon-all -s -hippocampal-subfields-T1.
Now I am goi
Hi Sal,
asegstats2table (and aparc..) will take the longitudinal qdec file and
then automatically select the *.long.* directories to create the table.
So there is no need to move them to a separate folder.
The longitudinal qdec file is simply a table with at least 2 columns
(for stacking res
Thank you Martin.
I will try this approach. I was able to temporarily move the longitudinal
subject data to its own folder to run aparc2table and aseg2table. Hopefully
this will also work for the hippocampal subfield script.
Best wishes,
Sal
Salil Soman, MD, MS
Postdoctoral Research Fellow - S
Hi Salil,
just run the hippo-subfields on the longitudinal results like this:
recon-all -long -hippo-subfields
to generate the subfield data. I am not familiar with the kvlQuantify...
script and think it works on all subjects in the Subjects dir. Not sure
what the best way is to solve this
Hi,
I have been able to do the longitudinal processing steps for a number of
subjects with 3 time points each, and then extract the generated statistics
using aparcstats2table and asegstats2table. Is it possible to perform
longitudinal analysis of the hippocampal subfields? If so, could someone
po
10 matches
Mail list logo
