OK, so there is something going wrong with your unix environment inside
of matlab (this is not a freesurfer problem per se). Is there someone
around that you can ask about it? Can someone else try this last command
to see if it works? There might be something wrong with the resource
file of th
set: Variable name must begin with a letter.
gunzip: Command not found.
ans =
1
On 30 Jul 2014, at 16:27, Douglas N Greve wrote:
>
> And in matlab, what do you get if you type
>
> unix('which gunzip')
>
>
>
>
> On 07/30/2014 11:08 AM, Sarina Iwabuchi wrote:
>> I get:
>>
>> /usr/bin/
And in matlab, what do you get if you type
unix('which gunzip')
On 07/30/2014 11:08 AM, Sarina Iwabuchi wrote:
> I get:
>
> /usr/bin/gunzip
>
> On 30 Jul 2014, at 15:58, Douglas N Greve wrote:
>
>>
>> Is gunzip in your path? When you open a shell and type
>> which gunzip
>>
>> what is printed
I get:
/usr/bin/gunzip
On 30 Jul 2014, at 15:58, Douglas N Greve wrote:
>
> Is gunzip in your path? When you open a shell and type
> which gunzip
>
> what is printed out?
>
>
> On 07/30/2014 10:45 AM, Sarina Iwabuchi wrote:
>> Hi Bruce,
>>
>> It still shows the same error:
>>
>> set: Varia
Is gunzip in your path? When you open a shell and type
which gunzip
what is printed out?
On 07/30/2014 10:45 AM, Sarina Iwabuchi wrote:
> Hi Bruce,
>
> It still shows the same error:
>
> set: Variable name must begin with a letter.
> gunzip: Command not found.
> ERROR: problem reading fname
> s
Hi Bruce,
It still shows the same error:
set: Variable name must begin with a letter.
gunzip: Command not found.
ERROR: problem reading fname
set: Variable name must begin with a letter.
rm: Command not found.
SWITCH expression must be a scalar or string constant.
Error in load_mgh (line 158)
sw
Hi Sarina,
you need to have $FREESURFER_HOME/matlab in your matlab path. Try:
addpath(sprintf('%s/matlab', getenv('FREESURFER_HOME')))
cheers
Bruce
On Wed,
30 Jul 2014, Sarina Iwabuchi wrote:
Hi Doug,
I get the following error:
Undefined function 'MRIread' for input arguments of type 'cha
Hi Doug,
I get the following error:
Undefined function 'MRIread' for input arguments of type 'char'.
Sarina
On 29 Jul 2014, at 18:34, Douglas N Greve wrote:
> a =
> MRIread('/Volumes/HD-PNTU3/MISSEDDATA/extn003/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz');
Sarina Iwabuchi
Division
Hmmm, I'm not sure what is going on either. The problem seems to be that
the file is not getting unzipped (and so does not have anything to do
with the switch statement per se).
Sarina, try going into matlab and running
a =
MRIread('/Volumes/HD-PNTU3/MISSEDDATA/extn003/surf/tmp-mris_compute_l
Hi Sarina,
Thanks for the log, I see better the problem. However I unfortunately don't
know the answer. The lGI calls MRIread and load_mgh, and the error seems to
related to load_mgh.m itself.
Bruce / Doug / Nick, any guess what can yield such a "switch expression must be
a scalar or string c
Hi Marie,I've attached the log file.Thanks very much,Sarina Iwabuchi
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