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Good thing it's not the software :) Also makes it easier for me to fix. In
my script there was one tiny mistake - the anatomical image for one subject
was repeated each time instead of using the files for different subjects. I
ran recon-all 100+ times o
Yes, that file is the only thing linking the functional to the anatomical. It's
too bad you messed up the files, but I'm relieved it was not my software:).
On 1/25/19 5:09 AM, Keri Woods wrote:
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Hi Douglas
Thanks very much for getting back to me. I created n
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Hi Douglas
Thanks very much for getting back to me. I created new separate directories
and re-processed one of the problem subjects individually, and the
registration worked well. So the problem is that the anatomical and
functional images come from di
Can you tar up the anatomical and functional analyses and send them to
me through our filedrop?
https://gate.nmr.mgh.harvard.edu/filedrop2/
when it asks for an email of the recipient, use gr...@nmr.mgh.harvard.edu
On 1/23/19 5:57 AM, Keri Woods wrote:
>
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I meant some are nearly perfect.
On Wed, Jan 23, 2019 at 11:49 AM Keri Woods wrote:
> Hi Douglas
>
> Thanks for the response.
>
> No, some of the registrations are fine. Some are close, but not perfect,
> while others are very bad.
>
> I've checked t
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Hi Douglas
Thanks for the response.
No, some of the registrations are fine. Some are close, but not perfect,
while others are very bad.
I've checked the subjectname file for some subjects with poor registration
(eg 20_101), and they are correct.
Tha
Are you saying that all of them have bad registrations? Some of them
(eg, 20_1, 20_10) look like they should be good. Others (eg, 20_101)
look like they could be bad. For the bad ones, are you totally sure that
the subjetname file has the correct name of the subject?
On 1/21/19 3:19 AM, Keri Wo
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Hi Douglas
Thank you for your reply.
I'm using freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a
I am using whole brain data. The functional and structural images were
acquired in different sessions on the same day, I don't know if that
compl
What version of FS are you using? version 6 initializes with mri_coreg (the FS
equivalent of spm_coreg). On whole-brain data, I've found this to be very
robust. Is your data whole-brain?
On 1/18/19 5:10 AM, Keri Woods wrote:
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Hi
I have a problem very simila
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Hi
I have a problem very similar to this one:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg23206.html
I've tried the suggestions given there, but it didn't fix my problem.
I'm running the FSFAST preproc-sess stream and the quality
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