What version of FS are you using? version 6 initializes with mri_coreg (the FS
equivalent of spm_coreg). On whole-brain data, I've found this to be very
robust. Is your data whole-brain?
On 1/18/19 5:10 AM, Keri Woods wrote:
External Email - Use Caution
Hi
I have a problem very similar to this one:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg23206.html
I've tried the suggestions given there, but it didn't fix my problem.
I'm running the FSFAST preproc-sess stream and the quality of the registration
is very poor for most of the subjects.
I've tried initializing the registration differently, using bbregister with
--init-fsl, --init-spm and init-header, which didn't improve the results at all.
I've also tried register-sess with --init-fsl, --init-spm and init-header, as
well as spmregister-sess and fslregister-sess.
Is there anything else I could try?
Using the SPM GUI, the registration was fine, so I thought that
spmregister-sess would have been an improvement, but it wasn't. Is there anyway
I can import the registration obtained using the SPM GUI?
Thanks for your help.
Thanks,
Keri
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