Re: [Freesurfer] Different segmentation atlas

2017-03-07 Thread Julie Hall
In the volume Thanks Julie On 3/03/2017 3:33 am, "Douglas N Greve" wrote: >so are these on the surface or in the volume? > > >On 03/01/2017 07:03 PM, Julie Hall wrote: >> Hi Doug >> >> Thanks for your quick reply. It??s a resting state FC data driven >> parcellation atlas (see >> https://acad

Re: [Freesurfer] Different segmentation atlas

2017-03-02 Thread Douglas N Greve
so are these on the surface or in the volume? On 03/01/2017 07:03 PM, Julie Hall wrote: > Hi Doug > > Thanks for your quick reply. It¹s a resting state FC data driven > parcellation atlas (see > https://academic.oup.com/cercor/article-lookup/doi/10.1093/cercor/bhu239 > and attached) > > Julie >

Re: [Freesurfer] Different segmentation atlas

2017-03-01 Thread Douglas N Greve
sorry, and what is the gordon parcellation? On 02/28/2017 04:27 PM, Julie Hall wrote: > I'm using the Freesurfer output to register my DWI images to, on which > I would like to apply graph theory on > > > (Sorry I'm a newbie in imaging so let me know if this is not the > answer you're looking f

Re: [Freesurfer] Different segmentation atlas

2017-02-28 Thread Julie Hall
I'm using the Freesurfer output to register my DWI images to, on which I would like to apply graph theory on (Sorry I'm a newbie in imaging so let me know if this is not the answer you're looking for) Sent from phone Please excuse shortness or typographical errors On 01 Mar 2017, at 02:42,

Re: [Freesurfer] Different segmentation atlas

2017-02-28 Thread Douglas Greve
what are you trying to do? get mean values of thickenss in each parcellation? If it is an annotation file, then you can use mri_segstats with --annot. Run it with --help to get examples On 2/27/17 8:09 PM, Julie Hall wrote: Dear all, I would like to use the Gordon Parcellation as segmentatio

[Freesurfer] Different segmentation atlas

2017-02-27 Thread Julie Hall
Dear all, I would like to use the Gordon Parcellation as segmentation atlas for my subjects. I have warped this atlas into individual subject space. Then I wanted to use mris_sample_parc to apply this parcallation, but I have a few questions.. 1. Is this the right command to use? 2. When