what are you trying to do? get mean values of thickenss in each
parcellation? If it is an annotation file, then you can use mri_segstats
with --annot. Run it with --help to get examples
On 2/27/17 8:09 PM, Julie Hall wrote:
Dear all,
I would like to use the Gordon Parcellation as segmentation atlas for
my subjects.
I have warped this atlas into individual subject space. Then I wanted
to use mris_sample_parc to apply this parcallation, but I have a few
questions..
1. Is this the right command to use?
2. When I use this command, I get the following error: could not open
translation file /Applications/freesurfer/cma_parcellation_colors.txt
I don’t have this color table, should I create one (and how?)?
Thank you
Julie
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