so are these on the surface or in the volume?
On 03/01/2017 07:03 PM, Julie Hall wrote: > Hi Doug > > Thanks for your quick reply. It¹s a resting state FC data driven > parcellation atlas (see > https://academic.oup.com/cercor/article-lookup/doi/10.1093/cercor/bhu239 > and attached) > > Julie > > > > On 2/03/2017 3:32 am, "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> wrote: > >> sorry, and what is the gordon parcellation? >> >> >> On 02/28/2017 04:27 PM, Julie Hall wrote: >>> I'm using the Freesurfer output to register my DWI images to, on which >>> I would like to apply graph theory on >>> >>> >>> (Sorry I'm a newbie in imaging so let me know if this is not the >>> answer you're looking for) >>> >>> >>> >>> Sent from phone >>> Please excuse shortness or typographical errors >>> >>> On 01 Mar 2017, at 02:42, "Douglas Greve" <gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >>> >>>> what are you trying to do? get mean values of thickenss in each >>>> parcellation? If it is an annotation file, then you can use >>>> mri_segstats with --annot. Run it with --help to get examples >>>> >>>> >>>> On 2/27/17 8:09 PM, Julie Hall wrote: >>>>> Dear all, >>>>> >>>>> I would like to use the Gordon Parcellation as segmentation atlas >>>>> for my subjects. >>>>> I have warped this atlas into individual subject space. Then I >>>>> wanted to use mris_sample_parc to apply this parcallation, but I >>>>> have a few questions.. >>>>> >>>>> 1. Is this the right command to use? >>>>> 2. When I use this command, I get the following error: could not >>>>> open translation file >>>>> /Applications/freesurfer/cma_parcellation_colors.txt >>>>> >>>>> I don¹t have this color table, should I create one (and how?)? >>>>> >>>>> Thank you >>>>> >>>>> Julie >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to >>>> whom it is >>>> addressed. If you believe this e-mail was sent to you in error and >>>> the e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>> you in error >>>> but does not contain patient information, please contact the sender >>>> and properly >>>> dispose of the e-mail. >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
