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Hi there,
I am looking for instructions on how to create/edit my own labels directly on
surfaces using the latest version of Freesurfer/Freeview but I cannot seem to
find this documentation. My understanding is that an annotation file has
multiple l
Try mri_surfcluster
On 3/6/19 10:03 PM, Jahan, Bushra wrote:
> Hello,
>
> I am wondering how to generate a label in FreeSurfer from peak
> activation in a cluster - is there a specific command?
>
> Thank you.
>
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> Freesurf
Hello,
I am wondering how to generate a label in FreeSurfer from peak activation in a
cluster - is there a specific command?
Thank you.
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Hi,
Thanks for the reply.
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Hi Ladan
the column of -1s means that the label hasn't been sampled onto to the
surface, and shouldn't matter if you are doing a volumetric analysis.
cheers
Bruce
On
Sun, 1 Jan 2017, Ladan Shahshahani wrote:
> Dear experts,
>
> I'm trying to create labels for subcortical regions. I want to us
Dear experts,
I'm trying to create labels for subcortical regions. I want to use these
labels to extract time series from resting state fMRI data (I want all of
the subcortical time series and I want them to be in mni305 space).
I'm not sure if I'm doing the right thing. Here's an example of what
Hi Jeff
yes, that's true, but for a GCA you will need to combine the different
labels into a single .mgz volume to give to mri_ca_train.
cheers
Bruce
On Thu, 23 Aug
2012, Jeff Thompson wrote:
I found this info on the tksurfer webpage.
The label file format is interchangable with TkMedit.
I found this info on the tksurfer webpage.
The label file format is interchangable with TkMedit. You can create a label in
TkSurfer, save it, and load it in TkMedit, or vice versa.
Jeff Thompson
From: jeff_rthomp...@hotmail.com
To: freesurfer@nmr.mgh.harvard.edu
Subject: creating labels, n
Hello,
How can tksurfer be used to create label files for the purpose of making a new
atlas, if that atlas is needed to create the surface files needed to view the
brain in tksurfer? Would people use FSL to create the masks, and convert them
into what is needed for freesurfer or is there anothe
I'm glad to hear it worked out
Bruce
On Thu, 14 Apr 2011, Ilana Hairston wrote:
> Thanks Bruce,
> It seems there are some display bugs on the server running freesurfer.
> In addition to the vanishing label (the label option was on), the
> scatter plots were messed up. After transferring the data
Thanks Bruce,
It seems there are some display bugs on the server running freesurfer.
In addition to the vanishing label (the label option was on), the
scatter plots were messed up. After transferring the data to a
different server it seems to be ok. Not sure what the issue is.
ilana
can you email us the label?
On Sat, 2 Apr 2011, Ilana Hairston wrote:
> sorry, i probably should have said that this was on the fsaverage, after
> glmfit.
> basically i wanted to create a VOI and extract a stats table for it.
>
>
> On 1 April 2011 22:33, Bruce Fischl wrote:
>
>> Hi Ilana,
>>
>> u
sorry, i probably should have said that this was on the fsaverage, after
glmfit.
basically i wanted to create a VOI and extract a stats table for it.
On 1 April 2011 22:33, Bruce Fischl wrote:
> Hi Ilana,
>
> usually a bizarre labeling means the annot is out of date. Try running
> recon-all wit
Hi Ilana,
usually a bizarre labeling means the annot is out of date. Try running
recon-all with -make all on that subject and see if it needs to recreate
anything.
Not sure what's up with your label, but things can act strangely when the
surfaces are out of date
cheers
Bruce
On Fri, 1 Apr 201
Hi there,
I'm having difficulty creating labels in tksurfer (v4.5). I followed the
"Creating Labels" instructions on the Wiki, however clicking Fill on the
closed path didn't seem to do anything. I used save label anyway, and tried
to load this new label again, and even though it says "7681 nonze
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