Thanks Bruce, It seems there are some display bugs on the server running freesurfer. In addition to the vanishing label (the label option was on), the scatter plots were messed up. After transferring the data to a different server it seems to be ok. Not sure what the issue is. ilana
______________________ If you can't be kind, be vague •••••••••••••••••••••••••••••••••••• Sent from my iPhone On Apr 4, 2011, at 10:23, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Ilana, > > it looks fine to me. Is it a left hemisphere label? If so, it looks like > superior temporal gyrus. Make sure that label display is turned on in the > tksurfer interface (the default may be off). It's one of the buttons on the > top right. > > cheers > Bruce > > > On Sat, 2 Apr 2011, Ilana Hairston wrote: > >> sorry for the delay (can't ftp from the server). the file is attached >> >> On 2 April 2011 12:33, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: >> >>> can you email us the label? >>> >>> On Sat, 2 Apr 2011, Ilana Hairston wrote: >>> >>> sorry, i probably should have said that this was on the fsaverage, after >>>> glmfit. >>>> basically i wanted to create a VOI and extract a stats table for it. >>>> >>>> >>>> On 1 April 2011 22:33, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: >>>> >>>> Hi Ilana, >>>>> >>>>> usually a bizarre labeling means the annot is out of date. Try running >>>>> recon-all with -make all on that subject and see if it needs to recreate >>>>> anything. >>>>> >>>>> Not sure what's up with your label, but things can act strangely when the >>>>> surfaces are out of date >>>>> >>>>> cheers >>>>> Bruce >>>>> >>>>> On Fri, 1 Apr 2011, Ilana Hairston wrote: >>>>> >>>>> Hi there, >>>>> >>>>>> I'm having difficulty creating labels in tksurfer (v4.5). I followed >>>>>> the >>>>>> "Creating Labels" instructions on the Wiki, however clicking Fill on the >>>>>> closed path didn't seem to do anything. I used save label anyway, and >>>>>> tried >>>>>> to load this new label again, and even though it says "7681 nonzero >>>>>> vertices >>>>>> found", again i see nothing. >>>>>> Not quite sure what i'm doing wrong. >>>>>> >>>>>> Also - which LUT file is the correct one to go with aparc.annot? i get >>>>>> the >>>>>> most bizarre labeling with FreeSurferColorLUT >>>>>> Thanks >>>>>> ilana >>>>>> >>>>>> >>>>>> >>>>>> >>>>> The information in this e-mail is intended only for the person to whom it >>>>> is >>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>> e-mail >>>>> contains patient information, please contact the Partners Compliance >>>>> HelpLine at >>>>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>>> in >>>>> error >>>>> but does not contain patient information, please contact the sender and >>>>> properly >>>>> dispose of the e-mail. >>>>> >>>>> >>>>> >>>> >>>> >>>> >> >> >> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
