I'm glad to hear it worked out Bruce On Thu, 14 Apr 2011, Ilana Hairston wrote:
> Thanks Bruce, > It seems there are some display bugs on the server running freesurfer. > In addition to the vanishing label (the label option was on), the > scatter plots were messed up. After transferring the data to a > different server it seems to be ok. Not sure what the issue is. > ilana > > > ______________________ > If you can't be kind, be vague > ???????????????????????????????????? > Sent from my iPhone > > > On Apr 4, 2011, at 10:23, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > >> Hi Ilana, >> >> it looks fine to me. Is it a left hemisphere label? If so, it looks like >> superior temporal gyrus. Make sure that label display is turned on in the >> tksurfer interface (the default may be off). It's one of the buttons on the >> top right. >> >> cheers >> Bruce >> >> >> On Sat, 2 Apr 2011, Ilana Hairston wrote: >> >>> sorry for the delay (can't ftp from the server). the file is attached >>> >>> On 2 April 2011 12:33, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: >>> >>>> can you email us the label? >>>> >>>> On Sat, 2 Apr 2011, Ilana Hairston wrote: >>>> >>>> sorry, i probably should have said that this was on the fsaverage, after >>>>> glmfit. >>>>> basically i wanted to create a VOI and extract a stats table for it. >>>>> >>>>> >>>>> On 1 April 2011 22:33, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: >>>>> >>>>> Hi Ilana, >>>>>> >>>>>> usually a bizarre labeling means the annot is out of date. Try running >>>>>> recon-all with -make all on that subject and see if it needs to recreate >>>>>> anything. >>>>>> >>>>>> Not sure what's up with your label, but things can act strangely when the >>>>>> surfaces are out of date >>>>>> >>>>>> cheers >>>>>> Bruce >>>>>> >>>>>> On Fri, 1 Apr 2011, Ilana Hairston wrote: >>>>>> >>>>>> Hi there, >>>>>> >>>>>>> I'm having difficulty creating labels in tksurfer (v4.5). I followed >>>>>>> the >>>>>>> "Creating Labels" instructions on the Wiki, however clicking Fill on the >>>>>>> closed path didn't seem to do anything. I used save label anyway, and >>>>>>> tried >>>>>>> to load this new label again, and even though it says "7681 nonzero >>>>>>> vertices >>>>>>> found", again i see nothing. >>>>>>> Not quite sure what i'm doing wrong. >>>>>>> >>>>>>> Also - which LUT file is the correct one to go with aparc.annot? i get >>>>>>> the >>>>>>> most bizarre labeling with FreeSurferColorLUT >>>>>>> Thanks >>>>>>> ilana >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>> The information in this e-mail is intended only for the person to whom it >>>>>> is >>>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>>> e-mail >>>>>> contains patient information, please contact the Partners Compliance >>>>>> HelpLine at >>>>>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>>>> in >>>>>> error >>>>>> but does not contain patient information, please contact the sender and >>>>>> properly >>>>>> dispose of the e-mail. >>>>>> >>>>>> >>>>>> >>>>> >>>>> >>>>> >>> >>> >>> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
