Re: [Freesurfer] Correction for multiple comparisons error

2013-05-31 Thread Fotiadis, Panagiotis
Great, thank you for your help! Panos From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Thursday, May 30, 2013 5:39 PM To: Fotiadis, Panagiotis Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Correction for multiple comparisons error

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Douglas N Greve
___ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Fotiadis, Panagiotis > Sent: Thursday, May 30, 2013 4:50 PM > To: Douglas N Greve > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Cor

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Fotiadis, Panagiotis
Fotiadis, Panagiotis Sent: Thursday, May 30, 2013 4:50 PM To: Douglas N Greve Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Correction for multiple comparisons error Great, thanks! Panos From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Fotiadis, Panagiotis
Great, thanks! Panos From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Thursday, May 30, 2013 4:47 PM To: Fotiadis, Panagiotis Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Correction for multiple comparisons error yes On 05/30/2013 04

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Douglas N Greve
4:29 PM > To: Fotiadis, Panagiotis > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Correction for multiple comparisons error > > This is a problem with version 5.0 when you set the clusterwise pvalue > to something close to 1. I re-rand it with .995 and it work. This is >

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Fotiadis, Panagiotis
gt; Panos > > From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] > Sent: Thursday, May 30, 2013 4:10 PM > To: Fotiadis, Panagiotis > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Correction for multiple comparisons error > > hmm, can't tell from

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Douglas N Greve
gt; Panos > > From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] > Sent: Thursday, May 30, 2013 4:10 PM > To: Fotiadis, Panagiotis > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Correction for multiple comparisons error > > hmm, can't tell from

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Fotiadis, Panagiotis
Definitely, just uploaded it! Panos From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Thursday, May 30, 2013 4:10 PM To: Fotiadis, Panagiotis Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Correction for multiple comparisons error hmm

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Douglas N Greve
mail! > > Best, > Panos > > > > From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] > Sent: Thursday, May 30, 2013 2:55 PM > To: Fotiadis, Panagiotis > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Correction for

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Douglas N Greve
ehalf of Douglas Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Monday, May 27, 2013 10:08 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Correction for multiple comparisons error > > what is your cmd line? What version of FS are you using? What is the >

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-30 Thread Fotiadis, Panagiotis
: Douglas Greve; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Correction for multiple comparisons error Hi Doug, 1) My cmd line is: mri_glmfit --y lh.Diseased_gender_age.thickness.10B.mgh --fsgd Diseased_gender_age.fsgd dods --C CAA_male-vs-female_age_slope.mtx --C CAA_male-vs

Re: [Freesurfer] Correction for multiple comparisons error

2013-05-27 Thread Douglas Greve
what is your cmd line? What version of FS are you using? What is the full terminal output? doug On 5/25/13 6:55 PM, Fotiadis, Panagiotis wrote: > Hi! > > I have been running the mri_glmfit-sim command to do the correction for > multiple comparisons for my group analysis and for some voxel-based

[Freesurfer] Correction for multiple comparisons error

2013-05-25 Thread Fotiadis, Panagiotis
Hi! I have been running the mri_glmfit-sim command to do the correction for multiple comparisons for my group analysis and for some voxel-based thresholds (not all) there is an error that comes up when reading the colortable from the annotation file: reading colortable from annotation file...