hmm, can't tell from that what is going on. Can you tar up lh.Diseased_gender_age.glmdir and drop it to me at our file drop (URL at the end of this email)? doug
On 05/30/2013 03:57 PM, Fotiadis, Panagiotis wrote: > Hey Doug, > > Of course, I attached it in txt format in this email! > > Best, > Panos > > > ________________________________________ > From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] > Sent: Thursday, May 30, 2013 2:55 PM > To: Fotiadis, Panagiotis > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Correction for multiple comparisons error > > Can you send me the terminal output in a text file? A word doc is very > inconvenient:). > doug > > On 05/28/2013 01:38 PM, Fotiadis, Panagiotis wrote: >> Hi Doug, >> >> 1) My cmd line is: >> >> mri_glmfit --y lh.Diseased_gender_age.thickness.10B.mgh --fsgd >> Diseased_gender_age.fsgd dods --C CAA_male-vs-female_age_slope.mtx --C >> CAA_male-vs-female.mtx --C CAA-vs-Control_age_slope.mtx --C >> CAA-vs-Control.mtx --C Males-vs-Females_age_slope.mtx --C >> Males-vs-Females.mtx --surf fsaverage lh --cortex --glmdir >> lh.Diseased_gender_age.glmdir >> >> 2) The FS version that I am using is the stable 5.0.0, >> >> 3) I have attached the full terminal output in this email. >> >> Thank you for your time! >> Panos >> ________________________________________ >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas Greve >> [gr...@nmr.mgh.harvard.edu] >> Sent: Monday, May 27, 2013 10:08 PM >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] Correction for multiple comparisons error >> >> what is your cmd line? What version of FS are you using? What is the >> full terminal output? >> doug >> >> >> On 5/25/13 6:55 PM, Fotiadis, Panagiotis wrote: >>> Hi! >>> >>> I have been running the mri_glmfit-sim command to do the correction for >>> multiple comparisons for my group analysis and for some voxel-based >>> thresholds (not all) there is an error that comes up when reading the >>> colortable from the annotation file: >>> >>> reading colortable from annotation file... >>> colortable with 35 entries read (originally >>> /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) >>> *** glibc detected *** mri_surfcluster: malloc(): memory corruption: >>> 0x0000000006e61230 *** >>> *** glibc detected *** mri_surfcluster: malloc(): memory corruption: >>> 0x0000000006e61230 *** >>> >>> and then it gets stuck. Do you happen to know what might be causing this >>> issue? >>> >>> Thank you for your time, >>> Panos >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
