Thank you very much, Doug!
On Fri, Aug 6, 2010 at 9:24 AM, Douglas Greve wrote:
> It's an empirical relationship based on the number of iterations needed to
> get a delta function to look like a gaussian of a certain FWHM. You can
> still specify the number of iterations with --nsmooth. See the
It's an empirical relationship based on the number of iterations
needed to get a delta function to look like a gaussian of a certain
FWHM. You can still specify the number of iterations with --nsmooth. See
the --help.
doug
On 8/5/10 5:34 PM, Xinian Zuo wrote:
> Nice to know the gold standard
Nice to know the gold standard, now going with the mri_vol2surf :)
One more question: As for the overlay surface smoothing option, in
tksurfer gui, I can set it by following ' tools -> surface -> smooth
overlay -> number of steps', or give an value to option ' --surf-fwhm
' in the command. What is
I'm not entirely sure how tksurfer is sampling from the volume to the
surface. mri_vol2surf is the gold standard, so use that.
doug
Xinian Zuo wrote:
> Hey Doug,
>
> Following your suggestions, I ran the command below:
>
> mri_vol2surf --mov data.nii.gz --reg
> ${FREESURFER_HOME}/average/mni152.
Hey Doug,
Following your suggestions, I ran the command below:
mri_vol2surf --mov data.nii.gz --reg
${FREESURFER_HOME}/average/mni152.register.dat --hemi rh --o
./rh.test.vol2surf.mgh --trgsubject fsaverage --surf inflated_pre
--projfrac 0 --interp nearest
but, seems the values in rh.test.vol2su
mri_vol2surf is the right command. Have you looked at the help for it?
You can get it by running
mri_vol2surf --help
I think tksurfer uses a projfrac of 0 and nearest neighbor
interpolation. You can load the result directly into tksurfer to see if
it looks the same.
doug
Xinian Zuo wrote:
>
Dear surfers,
Hi, I used freeesurfer to visualize my volume from FEAT outputs on the
surface in the way:
tksurfer fsaverage rh inflated_pre -overlay data.nii.gz -mni152reg
, then save surface overlay as a mgh file. My question is, how can I
get the identical mgh data by using a command line with
