mri_segstats with the --slabel option
On 09/13/2017 03:14 PM, John Anderson wrote:
> It seems that this command doesn't accept input files. Are there any
> commands in Freesurfer that can do similar job?
>
>
>> Original Message ----
>> Subject: Re: [F
It seems that this command doesn't accept input files. Are there any commands
in Freesurfer that can do similar job?
> Original Message
> Subject: Re: [Freesurfer] BA Labels
> Local Time: September 13, 2017 3:11 PM
> UTC Time: September 13, 2017 7:
Subject: Re: [Freesurfer] BA Labels
Local Time: September 13, 2017 2:57 PM
UTC Time: September 13, 2017 6:57 PM
From: fis...@nmr.mgh.harvard.edu
To: John Anderson , Freesurfer support list
Hi John
if you have run recon-all you should have a bunch of ex vivo BA labels in
the label dir.
cheers
command mri_vol2surf. Then how
can I generate the SUV and FA values from the BA labels similar to what the
command mris_anatomical_stats does?
> Original Message
> Subject: Re: [Freesurfer] BA Labels
> Local Time: September 13, 2017 2:57 PM
> UTC Time: September 13,
Hi John
if you have run recon-all you should have a bunch of ex vivo BA labels in
the label dir.
cheers
Bruce
On Wed, 13 Sep 2017, John Anderson wrote:
Dear FS experts,
I have SUV maps for subjects within two groups. I moved these SUV maps into
surface then I
concatenated the images in the
Dear FS experts,
I have SUV maps for subjects within two groups. I moved these SUV maps into
surface then I concatenated the images in the order of two groups then I used
the compiled file in a glm analysis to check the difference between the two
groups.
I aim to use V1 Atlas to derive the SUV
Hi Pradeep,
I just checked an example (using FS 5.3) and there my BA.stats do change
across time points in the longitudinal stream. So maybe
- you input identical images into the individual time points?
- you looked at the same file?
- maybe some other processing error (e.g. same name for diffe
Hello All,
I ran the freesurfer longitudinal stream for a subject with three time
points and found that the /stats/lh.BA.stats has remained constant across
all time points where as aseg.stats showed variations.
Sorry if this question is too nieve.
Thanks,
Pradeep
Hi Aaron,
if you look on the wiki there's an online preprint of a forthcoming
Cerebral Cortex paper on this. We're happy to distribute the labels and
were going to include them in the next release I think in any case.
cheers,
Bruce
On Wed,
21 May 2008, Goldman, Aaron (NIH/NIMH) [C] wrote:
Hi, I had a question regarding the labels listed in
FreesurferColorsLUT.txt. Does any of the data Freesurfer outputs contain
Labels 400-409 (corresponding to various Brodmann's Areas)? I've never
seen those labels used in the publicly-released version, but wanted to
verify since a coworker was spec
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