It seems that this command doesn't accept input files. Are there any commands
in Freesurfer that can do similar job?
> -------- Original Message --------
> Subject: Re: [Freesurfer] BA Labels
> Local Time: September 13, 2017 3:11 PM
> UTC Time: September 13, 2017 7:11 PM
> From: fis...@nmr.mgh.harvard.edu
> To: John Anderson <john.ande...@protonmail.com>
> Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
>
> you should be able to use mris_anatomical_stats I believe
>
> cheers
> Bruce
> On Wed, 13 Sep
> 2017, John Anderson wrote:
>
>> Thank you Dr Bruce,
>> The stat values for every BA are generated using the command
>> mris_anatomical_stats. I found this
>> command in the stats file for one of the BAs.
>> In this stats file I see values for gray matter volume, thickness ,... etc.
>>
>> If I move SUV map or FA map to surface using the command mri_vol2surf. Then
>> how can I generate the
>> SUV and FA values from the BA labels similar to what the command
>> mris_anatomical_stats does?
>>
>>
>> -------- Original Message --------
>> Subject: Re: [Freesurfer] BA Labels
>> Local Time: September 13, 2017 2:57 PM
>> UTC Time: September 13, 2017 6:57 PM
>> From: fis...@nmr.mgh.harvard.edu
>> To: John Anderson <john.ande...@protonmail.com>, Freesurfer support list
>> <freesurfer@nmr.mgh.harvard.edu>
>>
>> Hi John
>>
>> if you have run recon-all you should have a bunch of ex vivo BA labels in
>> the label dir.
>>
>> cheers
>> Bruce
>> On Wed, 13 Sep 2017, John Anderson wrote:
>>
>> > Dear FS experts,
>> > I have SUV maps for subjects within two groups. I moved these SUV maps
>> > into surface then I
>> > concatenated the images in the order of two groups then I used the
>> > compiled file in a glm
>> analysis
>> > to check the difference between the two groups.
>> >
>> > I aim to use V1 Atlas to derive the SUV values from the BA labels. I am
>> > not sure how to
>> utilize
>> > these labels in such analysis. In this context I have two questions:
>> >
>> > 1. Can these label be converted to ROIs similar to the ROIs derived from
>> > wmpar.mgz using the
>> command
>> > mri_binarize?
>> >
>> > 2. in WIKI it was mentioned that the command "recon-all -s subjid
>> > -label_v1" output the stat
>> values
>> > for every BA label. How can I derive similar stats from the SUV maps in
>> > the compiled file.
>> >
>> >
>> > Thanks in advance
>> > John
>> >
>> >
>>
>>
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>>
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