The -stat option gives you the FA/MD/RD/AD values along each tract for all
subjects in a table. You do whatever statistical analysis on them you
want, but you have to do that yourself.
On Sat, 10 Jan 2015, de Marco wrote:
Just a last question, it's almost over.I need to select a text file t
Just a last question, it's almost over.
I need to select a text file that contains the p-values from my statistical
analysis
Please, could you give me an example.
What statistical analysis ? What file ? in which directory ?
Thanks
Giovanni
> Le 10 janv. 2015 à 19:16, Anastasia Yendiki a
> écri
Thanks Anastasia for your rapid response.
I’ve freesurfer-Darwin-lion-stable-pub-v5.3.0
> Le 10 janv. 2015 à 19:16, Anastasia Yendiki a
> écrit :
>
> $FREESURFER_HOME/build-stamp.txt
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://
Giovanni - Glad to hear problems were solved and you got that far! I added
the -stat option after the 5.3 release of freesurfer, so you need to
download the latest tracula update from here:
http://surfer.nmr.mgh.harvard.edu/fswiki/Tracula/#Updates
Check which build of freesurfer you h
Hello Anastasia,
Everything is fine with the bval and bvec txt files.
I've got an error message in tract statistics when I try to run : trac-all
-stat -c $TUTORIAL_DATA/diffusion_tutorial/dmrirc.tutorial
[iMac-de-de:freesurfer/subjects/diffusion_tutorial] GdM% trac-all -stat -c
$TUTORIAL_DATA/di
Thanks Anastasia.
I try to rerun trac-all tomorrow. I let you know.
Giovanni
2015-01-07 22:50 GMT+01:00 Anastasia Yendiki :
>
> This is a plain text file, yes.
>
> On Wed, 7 Jan 2015, Giovanni de Marco wrote:
>
> Please,
>> Could you tell me if this file is better ? I used textwrangler on Imac
>
This is a plain text file, yes.
On Wed, 7 Jan 2015, Giovanni de Marco wrote:
Please,
Could you tell me if this file is better ? I used textwrangler on Imac
2015-01-07 22:36 GMT+01:00 Anastasia Yendiki :
Great, then copy these values into a new plain text file (not rich text
format),
Please,
Could you tell me if this file is better ? I used textwrangler on Imac
2015-01-07 22:36 GMT+01:00 Anastasia Yendiki :
>
> Great, then copy these values into a new plain text file (not rich text
> format), run it through tracula, and let us know what you get.
>
> To give you any idea of wh
Great, then copy these values into a new plain text file (not rich text
format), run it through tracula, and let us know what you get.
To give you any idea of what I see when I run more on the
diffusion60directions.txt that you attached:
% more diffusion60directions.txt
"diffusion60directio
Can I use this txt file for trac-all ?
2015-01-07 22:27 GMT+01:00 Giovanni de Marco :
> Actually I use this gradient file (diffusion60directions.txt) below with
> Trackvis and everything is fine.
>
> 0 0 0
> -0.164494 0.018226 0.98621
> -0.190456 0.462978 -0.865666
> -0.730086 0.629388 0.266169
>
Actually I use this gradient file (diffusion60directions.txt) below with
Trackvis and everything is fine.
0 0 0
-0.164494 0.018226 0.98621
-0.190456 0.462978 -0.865666
-0.730086 0.629388 0.266169
-0.613388 -0.746602 0.257566
0.306915 0.919394 -0.246004
0.317328 -0.847873 0.424753
0.965395 0.127917
I can see what the name of the file is, but try running "more" on it or
opening it with a text editor.
On Wed, 7 Jan 2015, Giovanni de Marco wrote:
Format txt
2015-01-07 22:08 GMT+01:00 Anastasia Yendiki :
This is not a plain text file. What format is it in?
On Wed, 7 Jan 2015
with trac-all I used these two files in attached file.
2015-01-07 22:15 GMT+01:00 Giovanni de Marco :
> Format txt
>
> 2015-01-07 22:08 GMT+01:00 Anastasia Yendiki >:
>
>>
>> This is not a plain text file. What format is it in?
>>
>>
>> On Wed, 7 Jan 2015, Giovanni de Marco wrote:
>>
>> it look
Format txt
2015-01-07 22:08 GMT+01:00 Anastasia Yendiki :
>
> This is not a plain text file. What format is it in?
>
>
> On Wed, 7 Jan 2015, Giovanni de Marco wrote:
>
> it looks like thats in attached file
>>
>> 2015-01-07 21:55 GMT+01:00 Anastasia Yendiki <
>> ayend...@nmr.mgh.harvard.edu>:
>>
This is not a plain text file. What format is it in?
On Wed, 7 Jan 2015, Giovanni de Marco wrote:
it looks like thats in attached file
2015-01-07 21:55 GMT+01:00 Anastasia Yendiki :
What does the gradient table look like? Based on these errors, it may not
like
that there is no 0
What does the gradient table look like? Based on these errors, it may not
like that there is no 0 before the decimal point:
printf: -.89: expected numeric value
printf: -.004202: expected numeric value
printf: -.001857: expected numeric value
On Wed, 7 Jan 2015, Giovanni de Marco wrote:
Please be advised,
This message contained one or more of the following prohibited file types:
(.zip,.bat,.exe,.pif,.scr). The file(s) have been automatically removed from
the message, in order to protect the privacy of our patients and employees, and
to protect the integrity of our systems and
Please be advised,This message contained one or more of the following prohibited file types: (.zip,.bat,.exe,.pif,.scr). The file(s) have been automatically removed from the message, in order to protect the privacy of our patients and employees, and to protect the integrity of our systems and data
Please be advised,
This message contained one or more of the following prohibited file types:
(.zip,.bat,.exe,.pif,.scr). The file(s) have been automatically removed from
the message, in order to protect the privacy of our patients and employees, and
to protect the integrity of our systems and
19 matches
Mail list logo
