Thanks Anastasia. I try to rerun trac-all tomorrow. I let you know. Giovanni
2015-01-07 22:50 GMT+01:00 Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu>: > > This is a plain text file, yes. > > On Wed, 7 Jan 2015, Giovanni de Marco wrote: > > Please, >> Could you tell me if this file is better ? I used textwrangler on Imac >> >> 2015-01-07 22:36 GMT+01:00 Anastasia Yendiki < >> ayend...@nmr.mgh.harvard.edu>: >> >> Great, then copy these values into a new plain text file (not rich >> text format), >> run it through tracula, and let us know what you get. >> >> To give you any idea of what I see when I run more on the >> diffusion60directions.txt that you attached: >> >> % more diffusion60directions.txt >> "diffusion60directions.txt" may be a binary file. See it anyway? >> book^@^@^@^@mark^@^@^@^@8^@^@^@8^@^@^@D9^F^@^@^@^D^P^@^@^@^@ >> ^@a^@^@5_ñt¸\ºA^@^@ >> ^@^@ÿ^?^@^@X8^F^@^D^@^@^@^C^C^@^@^@^D^@^@^L^@^@^@^A^A^@^@ >> Applications >> ^@^@^@^A^A^@^@freesurfer^@^@^H^@^@^@^A^A^@^@subjects^G^@^@^ >> @^A^A^@^@gaitals^@^Y >> ^@^@^@^A^A^@^@diffusion60directions.txt^@^@^ >> @^T^@^@^@^A^F^@^@^P^@^@^@$^@^@^@8^@ >> ^@^@H^@^@^@X^@^@^@^H^@^@^@^D^C^@^@“9$^@^@^@^@^@^H^@^@^@^D^ >> C^@^@ì^D1^@^@^@^@^@^H >> ^@^@^@^D^C^@^@©%2^@^@^@^@^@^H^@^@^@^D^C^@^@E^V:^@^@^@^@^@^H^ >> @^@^@^D^C^@^@;Œ6^@^@^@^@^@^T^@^ >> @^@^A^F^@^@˜^@^@^@¨^@^@^@¸^@^@^@È^@^@^@Ø^@^@^@^H^@^@^@^@^D^@ >> ^@A.y^@^@^@^X^@^@^@^A^B^@^@^A^@ >> ^@^@^@^@^@^@^_^B^@^@^@^@^@^@^_^B^@^@^@^@^@^@^@^@^@^@^A^E^@^@ >> ^H^@^@^@^A >> ^@^@file:///^L^@^@^@^A^A^@^@MacintoshH^@^@^@^D^C^@^@^@€œ >> è^@^@^@^H^@^@^@^@^D^@^@A¹^±Æ^@^@^@$^@^@^@^A^A^@^@E7566EA3-C427-3CD3-93B >> D-A1F59AF64343^X^@^@^@ >> >> >> On Wed, 7 Jan 2015, Giovanni de Marco wrote: >> >> Actually I use this gradient file (diffusion60directions.txt) >> below >> with Trackvis and >> everything is fine. >> >> 0 0 0 >> -0.164494 0.018226 0.98621 >> -0.190456 0.462978 -0.865666 >> -0.730086 0.629388 0.266169 >> -0.613388 -0.746602 0.257566 >> 0.306915 0.919394 -0.246004 >> 0.317328 -0.847873 0.424753 >> 0.965395 0.127917 0.227264 >> -0.049691 -0.527795 -0.847917 >> 0.207666 -0.97417 -0.088703 >> -0.737567 -0.673497 -0.048958 >> -0.237888 0.330251 0.913424 >> -0.438285 -0.492274 0.752046 >> 0 0 0 >> 0.399147 0.037209 0.916132 >> -0.463775 0.588699 -0.662078 >> -0.706111 0.10558 -0.700186 >> 0.721691 -0.408589 0.558763 >> 0.614018 0.500213 0.610548 >> -0.012408 -0.941819 -0.335892 >> 0.152342 0.987393 0.042982 >> -0.538071 0.653574 0.532278 >> 0.033139 0.778743 0.626467 >> 0.936281 -0.140182 -0.322068 >> -0.612455 -0.210117 -0.762069 >> 0.674572 0.218058 -0.705268 >> 0 0 0 >> -0.339374 -0.684242 -0.645475 >> -0.494112 0.845667 0.201743 >> 0.472146 -0.289458 0.832641 >> -0.842214 -0.474515 0.255951 >> 0.077797 -0.973101 0.216848 >> 0.121406 0.359531 -0.925202 >> -0.816364 -0.460748 -0.348226 >> 0.505147 -0.102942 -0.856872 >> 0.624079 -0.684413 0.376968 >> 0.158319 -0.724422 0.67093 >> -0.474079 -0.878731 -0.055503 >> 0.102353 0.211942 0.971908 >> 0 0 0 >> 0.898924 -0.155384 0.409623 >> -0.405292 -0.747871 0.525763 >> 0.904768 -0.410581 -0.113222 >> -0.982422 -0.127045 0.136774 >> -0.447504 0.884214 -0.133813 >> -0.862671 0.445789 -0.238897 >> -0.279017 0.842797 0.460264 >> -0.546017 0.395479 0.738554 >> -0.595501 -0.720978 -0.354358 >> 0.783099 -0.387266 -0.486601 >> 0.147511 0.645045 -0.749772 >> 0.403084 0.197286 -0.893645 >> 0 0 0 >> -0.985485 0.157362 -0.063694 >> -0.35289 -0.402766 -0.84454 >> 0.766668 -0.095163 -0.634952 >> -0.265955 0.620056 0.738104 >> 0.078023 0.870617 -0.485736 >> 0.833015 0.17549 0.524681 >> -0.720578 0.690754 -0.060215 >> 0.917014 0.396014 0.047526 >> -0.140148 0.147395 -0.979098 >> 0.314193 0.876563 0.364581 >> 0.874324 0.190397 -0.446439 >> -0.677724 -0.514302 0.525532 >> 0 0 0 >> >> 2015-01-07 22:21 GMT+01:00 Anastasia Yendiki >> <ayend...@nmr.mgh.harvard.edu>: >> >> I can see what the name of the file is, but try running >> "more" >> on it or opening >> it with a text editor. >> >> On Wed, 7 Jan 2015, Giovanni de Marco wrote: >> >> Format txt >> >> 2015-01-07 22:08 GMT+01:00 Anastasia Yendiki >> <ayend...@nmr.mgh.harvard.edu>: >> >> This is not a plain text file. What format >> is it >> in? >> >> On Wed, 7 Jan 2015, Giovanni de Marco wrote: >> >> it looks like thats in attached file >> >> 2015-01-07 21:55 GMT+01:00 Anastasia >> Yendiki >> <ayend...@nmr.mgh.harvard.edu>: >> >> What does the gradient table >> look >> like? Based on >> these errors, >> it may not like >> that there is no 0 before the >> decimal >> point: >> >> printf: -.999989: expected >> numeric >> value >> printf: -.004202: expected >> numeric >> value >> printf: -.001857: expected >> numeric >> value >> >> >> On Wed, 7 Jan 2015, Giovanni de >> Marco >> wrote: >> >> I don't know if you >> received the >> zipped log >> files ? (I >> received an >> error message) >> >> I send you the most >> recent log >> files. >> >> See you then >> >> Giovanni >> >> >> 2015-01-07 20:57 GMT+01:00 >> Giovanni de Marco >> < >> demarco.giova...@gmail.com>: >> >> Please be advised, >> >> This message >> contained one >> or more of >> the >> following >> prohibited file types: >> >> (.zip,.bat,.exe,.pif,.scr). The >> file(s) have been >> automatically removed from >> the message, in >> order to >> protect the >> privacy of >> our patients >> and employees, and >> to protect the >> integrity >> of our >> systems and >> data. As a >> security measure to >> prevent potential >> viruses >> and malware, >> Partners >> prohibits the >> receipt of >> attached files that >> have >> the potential >> to execute >> malicious >> code. >> >> You should contact >> the >> sender, and if >> you are sure >> that the >> original attached >> file(s) are safe, >> please >> use the >> Partners Secure >> File Transfer >> system, >> >> https://transfer.partners.org to work >> with the >> sender to >> securely transfer the >> removed >> attachment(s). >> >> If you do not have >> an >> account on the >> Partners >> Secure File >> Transfer System, >> please register for >> an >> account by >> using the >> following steps: >> >> 1. Go to >> https://transfer.partners.org >> 2. Click on "I >> don't have >> an account >> yet" >> 3. Enter your email >> address and click >> “Register” >> 4. You will receive >> an >> email with >> final >> instructions >> >> More information >> can be >> found at >> http://rc.partners.org/sFTP >> (Partners login >> required) >> >> If you have any >> questions >> or issues >> please enter a >> ticket in >> ServiceNow or call >> your Service Desk. >> >> >> **** Original >> message >> follows **** >> >> >> I found all these >> log >> files. >> >> >> Le 7 janv. 2015 à >> 17:25, >> Anastasia >> Yendiki >> < >> ayend...@nmr.mgh.harvard.edu> >> a écrit : >> >> trac-all.log >> >> >> A MIME attachment of type >> <application/zip> >> was removed >> here >> by a >> drop-attachments-by-filetype filter >> rule on the >> host >> <Phsmgmx17.partners.org>. >> >> >> _______________________________________________ >> Freesurfer mailing list >> >> Freesurfer@nmr.mgh.harvard.edu >> >> >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this >> e-mail >> is intended >> only for the >> person to >> whom it is >> addressed. 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If the e-mail was >> sent to >> you in error >> but does not contain patient information, please contact the >> sender >> and properly >> dispose of the e-mail. >> >> >> >> >> -- >> >> Tel: +33 (0) 6 74 61 01 65 >> demarco.giova...@gmail.com >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> >> -- >> >> Tel: +33 (0) 6 74 61 01 65 >> demarco.giova...@gmail.com >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Tel: +33 (0) 6 74 61 01 65 demarco.giova...@gmail.com
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