Re: [Freesurfer] mri_convert - returns different image size

2012-04-25 Thread Popescu, V.
Thank you very much! It works now! Best regards, Veronica -Original Message- From: Sindhuja Tirumalai Govindarajan [mailto:sindh...@nmr.mgh.harvard.edu] Sent: dinsdag 24 april 2012 19:29 To: Popescu, V. Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] mri_convert

Re: [Freesurfer] mri_convert - returns different image size

2012-04-24 Thread Popescu, V.
I'll try that. Thank you! -Original Message- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: dinsdag 24 april 2012 16:24 To: Popescu, V. Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: RE: [Freesurfer] mri_convert - returns different image size I see. Then why

Re: [Freesurfer] mri_convert - returns different image size

2012-04-24 Thread Popescu, V.
I want to run N3 on it and then use it with FSL, and apply some masks on it (that are the size of the original image). -Original Message- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: dinsdag 24 april 2012 15:50 To: Popescu, V. Cc: 'freesurfer@nmr.mgh.harvar

Re: [Freesurfer] mri_convert - returns different image size

2012-04-24 Thread Popescu, V.
: Popescu, V. Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] mri_convert - returns different image size Hi Veronica can you send us the command line you are using? N3 by itself doesn't use mri_convert - our wrappers do. cheers Bruce On Tue, 24 Apr 2012, Popescu, V. wro

[Freesurfer] mri_convert - returns different image size

2012-04-23 Thread Popescu, V.
Dear all, I want to use N3 on nifti images, and I have different versions installed on two machines. On one machine I have an older version of N3 (1.7.2.2) which uses mri_convert version 4 and everything works fine. On the other machine I have N3 version 1.12 which uses mri_convert version 5; th

Re: [Freesurfer] Virtual Box crashes

2011-11-21 Thread Popescu, V.
ag 21 november 2011 17:20 To: Popescu, V. Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Virtual Box crashes Sounds like a virtualbox problem. Try reinstalling Virtualbox.. Try adding a bit more video memory to the vm. BTW, is there an error message, or does it just silently shut

[Freesurfer] Virtual Box crashes

2011-11-21 Thread Popescu, V.
Dear all, Please help with the following problem: I am trying to run the FreeSurfer disk image on Virtual Box 4.1.6. I start it, I get: "GRUB loading please wait..." and then the Virtual Box crashes. It has 2048 MB base memory, 12 MB video memory. Thank you! Veronica ___