Re: [Freesurfer] trac-all -path error

2012-05-21 Thread Kiely Madhavan
-help : print full contents of help > > > > logout > > > > [Process completed] > > > > On Fri, May 18, 2012 at 1:59 PM, Anastasia Yendiki < > > ayend...@nmr.mgh.harvard.edu> wrote: > > > >> > >> This

Re: [Freesurfer] trac-all -path error

2012-05-18 Thread Kiely Madhavan
ki < ayend...@nmr.mgh.harvard.edu> wrote: > > This is a script, it's in the directory where all freesurfer scripts are. > You can find it by doing "which trac-preproc". > > > On Fri, 18 May 2012, Kiely Madhavan wrote: > > OK - Can you point me in the direction of the trac-p

Re: [Freesurfer] trac-all -path error

2012-05-18 Thread Kiely Madhavan
ything but that, or change that line to > the options that worked for you. > > > > On Fri, 18 May 2012, Kiely Madhavan wrote: > > I only created a diff2anat.flt.mat file which replaced the old one. Do >> they all need to be recreated? If so, is that something I >&

Re: [Freesurfer] trac-all -path error

2012-05-18 Thread Kiely Madhavan
with the new ones? > > > On Fri, 18 May 2012, Kiely Madhavan wrote: > > That seemed to fix the registration issue, but I'm still unable to >> reconstruct the tracts using trac-all -path. I'm getting the same error >> that >> the control points are not

Re: [Freesurfer] trac-all -path error

2012-05-18 Thread Kiely Madhavan
That seemed to fix the registration issue, but I'm still unable to reconstruct the tracts using trac-all -path. I'm getting the same error that the control points are not within the mask. THis happens for all tracts. Thanks, Kiely On Wed, May 16, 2012 at 11:39 AM, Anastasia Yendiki < ayend...@nm