Re: [Freesurfer] Reprocessing data, COR-files

2007-07-06 Thread Inge K. Amlien
-nomotioncor here, or has anything else been done to the data? Have a nice day Inge On Tue, July 3, 2007 17:56, Bruce Fischl wrote: > you should be able to use COR files as input > On Tue, 3 Jul 2007, Inge K. > Amlien wrote: > >> Hi, >> we are about to reprocess quite a few

[Freesurfer] Reprocessing data, COR-files

2007-07-03 Thread Inge K. Amlien
Hi, we are about to reprocess quite a few subjects originally done in 2004. I am wondering if I will need to dig up the original dicoms, or if I can convert the COR-files to .mgz. -In the first study we have 2 series converted to orig/001/COR* and orig/002/COR*. -In the second study we have only 1

Re: [Freesurfer] Installation on sun grid]

2007-02-16 Thread Inge K. Amlien
install that > works pretty well at the University of Chicago. > > Best, > Uri > > > On 2/15/07, Inge K. Amlien <[EMAIL PROTECTED]> wrote: >> Hello list, >> we are installing Freesurfer on a computer cluster (about 400 cpu's) >> running the >&g

[Freesurfer] Installation on sun grid

2007-02-15 Thread Inge K. Amlien
Hello list, we are installing Freesurfer on a computer cluster (about 400 cpu's) running the Sun Grid Engine. As there are other applications installed on the compute nodes and space is limited, we would like to strip out any files from the Freesurfer installation not needed for processing. Is it

Re: [Freesurfer] anonymizing dicom files

2006-09-25 Thread Inge K. Amlien
Is all info from the the dicom headers included in the mgz's throughout the processing stream (eg. Patientname and such)? Najmeh: Have you found a solution for anonymizing dicoms you are satified with? Thanks Inge Amlien > > sorry about nonstop posting! > > I'm trying to remove the patient name

Re: [Freesurfer] Bad scans/normalization

2006-06-14 Thread Inge K. Amlien
rn the brightness down you'll also see better g/w > distinction. > > cheers, > Bruce > > > On Wed, 14 Jun 2006, Inge K. > Amlien wrote: > >> Hello fellow Freesurfers! >> >> We are at the startup of a new project, and we have some concerns about >

Re: [Freesurfer] buckner tutorial data

2006-03-28 Thread Inge K. Amlien
Hi, if you are able to come by Psykologisk Institutt in Oslo and pick up a DVD, I would be happy to make you a copy. Regards Inge > Hi, > > We seem to be having a long-standing problem downloading the bucker > tutorial data > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/buckner_data-tutorial_subjs.t

Re: [Freesurfer] mri_convert problems

2006-03-23 Thread Inge K. Amlien
Hi Bruce and Karsten, the volume looks much better in nICE, that is why we thought it was odd. I have no idea why the log says 130 files found, there is clearly 128 files in that folder. I will process it further and see how it works out. Thanks and have a nice day Inge > The log say's that it ha