Thanks, for the first study I converted the COR-files (residing in mri/orig/00*/) to mri/orig/001.mgz and 002.mgz and ran recon-all as normal.
For the second study, are the COR-files residing in folder mri/orig/COR-* equal to orig.mgz in 3.05? Is it ok to convert to mgz and run recon-all with -nomotioncor here, or has anything else been done to the data? Have a nice day Inge On Tue, July 3, 2007 17:56, Bruce Fischl wrote: > you should be able to use COR files as input > On Tue, 3 Jul 2007, Inge K. > Amlien wrote: > >> Hi, >> we are about to reprocess quite a few subjects originally done in 2004. >> I >> am wondering if I will need to dig up the original dicoms, or if I can >> convert the COR-files to .mgz. >> >> -In the first study we have 2 series converted to orig/001/COR* and >> orig/002/COR*. >> -In the second study we have only 1 series, and only the orig/COR-files, >> (I believe the averaging step has been run somehow). >> >> Does Freesurfer (3.05) handle the first steps any different now, or is >> okay to convert to .mgz and go from there? >> >> Thanks, >> Inge >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
