at 16:24, Bruce Fischl
wrote:
> you need to change your path so that
>
> which recon-all
>
> gives you the v6 one. something like:
>
> set path = ($FREESURFER_HOME/bin $path)
> rehash
>
> where FREESURFER_HOME points to the v6 version
>
> cheers
> Bruce
>
&
all
>
> I bet it points to somewhere other than your V6 FREESURFER_HOME/bin dir
>
> cheers
> Bruce
>
>
>
> On Wed, 22 Nov 2017, Hwee Ling Lee wrote:
>
> Dear Bruce,
>>
>> Thanks for your patience. Attached you will find the screenshot of my
>> serv
Hi Bruce,
I downloaded the latest version of freesurfer, "CentOS 6 x86_64 (64b)".
Cheers,
Hweeling
On 21 November 2017 at 23:57, Bruce Fischl
wrote:
> oh, this may be a version mismatch then. Which version of FS are you using?
>
> On Tue, 21 Nov 2017, Hwee Ling Lee wr
t folder is 'RB_all_2008-03-26.mni152.2mm.lta'.
Cheers,
Hweeling
On Nov 21, 2017 18:05, "Bruce Fischl" wrote:
> Hi Hweeling
>
> what is FREESURFER_HOME set to in the environment? Does that file exist?
> It is a standard part of our distribution
>
> cheers
> Bruce
Dear all,
I have T1 images collected from the 7T MRI scanner.
I downloaded the most recent freesurfer software, and followed all
instructions to install the software before using it.
I would like to segment the T1 data using its high resolution image, and
also to segment the hippocampal subfield
Dear all,
Apologies for my ignorance.
I'm trying to extract the transverse gyrus, transverse sulcus, planum
temporale and temporal pole from the inflated surface created by freesurfer.
What I intend to do, is to convert these labels into spm analyze format
files in native space, and apply the
Hi!
I hope this finds you well.
What is the difference between aparc+aseg.mgz and aparc.a2005s+aseg.mgz?
I tried to extract the label for 1180 but I get nothing from aparc+aseg.mgz.
I was wondering if the difference in these images affect what kind of label
I extract.
Thanks!
Ch
EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Bruce Fischl
Sent: 17 September 2008 15:32
To: Hwee Ling Lee
Cc: freesurfer@nmr.mgh.harvard.edu; 'Doug Greve'
Subject: RE: [Freesurfer] freesurfer
they are listed in $FREESURFER_HOME/FreeSurferColorLUT.txt
cheers,
Bruce
On Wed, 17 Sep 2
t: 16 September 2008 22:51
To: Hwee Ling Lee
Cc: freesurfer@nmr.mgh.harvard.edu; 'Doug Greve'
Subject: Re: [Freesurfer] freesurfer
Hi HweeLing,
you can use mri_extract_label aparc+aseg.mgz
then the command line Jenni posted before to transform it to MNI space (or
you can
re to transform it to MNI space (or
> you can try giving the talairach.xfm to mri_extract_label with -t, but I'm
> not positive that works)
>
> cheers,
> Bruce
>
>
>
> On Tue, 16 Sep 2008, Hwee Ling Lee wrote:
>
> >
> > Hi,
> >
> > I w
mask for individual subjects as many studies
have shown differences in STS morphology.
Thanks,
HweeLing
On Tue, 16 Sep 2008 15:44:11 -0400 (EDT)
Bruce Fischl <[EMAIL PROTECTED]> wrote:
> can you tell us exactly what you would like to do with it?
> On Tue, 16 Sep 2008, Hwee Li
Behalf Of Doug Greve
Sent: 12 September 2008 18:10
To: Bruce Fischl
Cc: freesurfer@nmr.mgh.harvard.edu; Hwee Ling Lee
Subject: Re: [Freesurfer] freesurfer
You can also skip the 1st two steps and just convert aparc+aseg.mgz to
MNI with mri_vol2vol (make sure to use the --interp nearest flag). Then
t out as a separate image to be used as a mask image in
another program?
Thanks,
HweeLing
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Doug Greve
Sent: 12 September 2008 18:10
To: Bruce Fischl
Cc: freesurfer@nmr.mgh.harvard.edu; Hwee Ling Lee
S
ach individual subject, and preferably
to be in the MNI space or if not, at least in the native space.
Thank you.
Best wishes,
HweeLing
---
Hwee Ling, Lee
Max-Planck Institute for Biological Cybernetics
Cognitive Neuroimag
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