Hi Bruce, I downloaded the latest version of freesurfer, "CentOS 6 x86_64 (64b)".
Cheers, Hweeling On 21 November 2017 at 23:57, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > oh, this may be a version mismatch then. Which version of FS are you using? > > On Tue, 21 Nov 2017, Hwee Ling Lee wrote: > > Dear Bruce, >> Thanks for your reply. >> I checked the folder and did not find the file that was requested. >> >> What I have in the average folder that has 'RB*.gca' are >> 'RB_all_2016-05-10.vc700.gca' and >> 'RB_all_withskull_2016-05-10.vc700.gca'. >> The other file in that folder is 'RB_all_2008-03-26.mni152.2mm.lta'. >> >> Cheers, >> Hweeling >> >> On Nov 21, 2017 18:05, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >> Hi Hweeling >> >> what is FREESURFER_HOME set to in the environment? Does that file >> exist? It is a >> standard part of our distribution >> >> cheers >> Bruce >> >> >> On Tue, 21 Nov 2017, Hwee Ling Lee wrote: >> >> Dear all, >> >> I have T1 images collected from the 7T MRI scanner. >> >> I downloaded the most recent freesurfer software, and >> followed all >> instructions to install the software before using it. >> >> I would like to segment the T1 data using its high resolution >> image, and >> also to segment the hippocampal subfields. >> >> For command, I use this: >> >> recon-all -all -s <subject name> -hires -i <subject dicom T1 >> image frame 1 >> location> >> >> However, I get an error message: >> >> cannot find $FREESURFER_HOME/average/RB_all_2008-03-26.gca >> >> I'm not sure what I did wrong. >> >> Also, how can I combine high resolution segmentation and >> hippocampal >> subfields segmentation? >> >> Could someone please help? >> >> Thanks. >> >> Best regards, >> Hweeling >> >> >> >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >>
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