Dear Bruce, Thanks for your reply. I checked the folder and did not find the file that was requested.
What I have in the average folder that has 'RB*.gca' are 'RB_all_2016-05-10.vc700.gca' and 'RB_all_withskull_2016-05-10.vc700.gca'. The other file in that folder is 'RB_all_2008-03-26.mni152.2mm.lta'. Cheers, Hweeling On Nov 21, 2017 18:05, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: > Hi Hweeling > > what is FREESURFER_HOME set to in the environment? Does that file exist? > It is a standard part of our distribution > > cheers > Bruce > > > On Tue, 21 Nov 2017, Hwee Ling Lee wrote: > > Dear all, >> >> I have T1 images collected from the 7T MRI scanner. >> >> I downloaded the most recent freesurfer software, and followed all >> instructions to install the software before using it. >> >> I would like to segment the T1 data using its high resolution image, and >> also to segment the hippocampal subfields. >> >> For command, I use this: >> >> recon-all -all -s <subject name> -hires -i <subject dicom T1 image frame 1 >> location> >> >> However, I get an error message: >> >> cannot find $FREESURFER_HOME/average/RB_all_2008-03-26.gca >> >> I'm not sure what I did wrong. >> >> Also, how can I combine high resolution segmentation and hippocampal >> subfields segmentation? >> >> Could someone please help? >> >> Thanks. >> >> Best regards, >> Hweeling >> >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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