[Freesurfer] mri_label2label: some vertices mapped to nothing in target subject space

2019-02-06 Thread Hengda He
External Email - Use Caution Hi Freesurfer Developers, I'm trying to map the vertices of a region (ex. caudal middle frontal) in one subject into the space of another subject (MNI) by using mri_label2label. I am using the freesurfer_dev/bin/mri_label2label.bin from freesurfer-x86

[Freesurfer] Segmentation Volume to Cortical Labels

2017-11-13 Thread Hengda He
Hi Freesurfer Developers, I have a manually edited segmentation of the brain cortical regions, and I want to map it to cortical parcellation labels on both white matter surface and pial surface. So I am wondering if there is any way in FreeSurfer that can map the segmentation volume to cortical la

[Freesurfer] mri_label2label with close operation

2017-05-10 Thread Hengda He
Hi Freesurfer Developers, I'm trying to map the vertices of caudal middle frontal in one subject into the space of another subject by using mri_label2label. And I used the method mentioned in this https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2015-November/042298.html We are using freesur