[Freesurfer] cerebellar parcellation using the Buckner2011_17Networks atlas

2021-01-26 Thread Hyo Kyoung An
External Email - Use Caution Dear expert, I am Anna, a medical school student at Pusan national University, Korea. I am writing this email because I'd like to ask you questions. I would like to measure the cerebellar gray matter volume parcellated using the Buckner2011_17Networks

[Freesurfer] Chorid-plexus in Freesurfer reconall

2020-04-07 Thread Lijun An
? I found that mean of 'chorid-plexus' in ADNI is around 1500 mm^3, when I ran reconall for my local subejcts (a local dataset), I found the mean of 'chorid-plexus' is around 800 mm^3. Could anyone give an explanation or a paper I could refer to for this 'chorid-plexus&

Re: [Freesurfer] New UCSF Cross-Sectional FreeSurfer (6.0) data

2020-02-02 Thread An Lijun
log in to loni and you could see click the adni repo and access data. As far as I know, ADNI only released partial Freesurfer 6.0 data (ADNI 3 maybe I could not remember clearly) An Lijun Hasan Al Marzouqi mailto:hasan.almarzo...@ku.ac.ae>> 于2020年2月3日周一 下午12:52写道: External E

Re: [Freesurfer] extract lgi

2019-11-25 Thread An Lijun
External Email - Use Caution Dear Yanyan, Actually you could refer to the freesurfer tutorial firstly. Best Regards, An Lijun Lin Yanyan mailto:linyan...@outlook.com>> 于2019年11月26日周二 下午12:49写道: External Email - Use Caution Hello, I have a question about lgi com

[Freesurfer] Map fMRI data onto surface

2019-11-21 Thread An
. I am wondering is the ratio reasonable and how could I improve the result? I guess resolution would be one of reasons causing the high 0 value ratio, my fMRI data is 2mm^3 and anatomical data is 1mm^3. Many thanks for your help. Best, An ___ Freesurfer

Re: [Freesurfer] Volume (WM Parcellation) of RightCerebralCortex--Freesurfer 6.0

2019-11-18 Thread An Lijun
External Email - Use Caution Thanks for your reply! You mean LeftCerebralCortex is actually lhCortex in aseg.stats, right? Best Regards, An Lijun Greve, Douglas N.,Ph.D. mailto:dgr...@mgh.harvard.edu>> 于2019年11月19日周二 上午2:20写道: You can find it in aseg.stats under # M

Re: [Freesurfer] 4D multi-frame parcellation

2019-11-18 Thread An
n the future. Many thanks. Best, An Greve, Douglas N.,Ph.D. 于2019年11月18日周一 下午4:47写道: > why did you call it bert? It just makes things confusing > > On 11/18/19 2:53 PM, An wrote: > > > > External Email - Use Caution > > > > Here is my recon-all command line

Re: [Freesurfer] 4D multi-frame parcellation

2019-11-18 Thread An
External Email - Use Caution Here is my recon-all command line: recon-all -i ana_Vol.nii -s bert -all Many thanks. Best, An Greve, Douglas N.,Ph.D. 于2019年11月18日周一 下午2:33写道: > What was your original recon-all command? > > On 11/18/19 1:48 PM,

Re: [Freesurfer] 4D multi-frame parcellation

2019-11-18 Thread An
. I use it because I need to specify the required flag -s in bbregister in order to register the functional volume to its anatomical volume. Many thanks. Best, An Greve, Douglas N.,Ph.D. 于2019年11月18日周一 下午1:31写道: > I don't understand what you are trying to do. I'm very con

[Freesurfer] Volume (WM Parcellation) of RightCerebralCortex -- Freesurfer 6.0

2019-11-14 Thread An Lijun
Freesurfer reconall 6.0, I could not find CerebralCortex under 'stats' folder, do you know where it could be? Thanks so much. Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] 4D multi-frame parcellation

2019-11-14 Thread An
that? Many thanks. Best, An Greve, Douglas N.,Ph.D. 于2019年11月13日周三 下午12:20写道: > If you have an anatomical MR that you have run through recon-all, then > just use that one instead of bert in your steps below > ps. Please remember to post to the FS list and not to us personally > > O

[Freesurfer] Volume (WM Parcellation) of RightCerebralCortex--Freesurfer 6.0

2019-11-13 Thread An Lijun
Freesurfer reconall 6.0, I could not find CerebralCortex under 'stats' folder, do you know where it could be? Thanks so much. Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] 4D multi-frame parcellation

2019-11-11 Thread An
--srcreg file in mri_vol2surf as the output register.dat in step2 is wrong. But the output is still wrong. Many thanks. Best, An Greve, Douglas N.,Ph.D. 于2019年11月11日周一 下午12:16写道: > When you say it is 4D, what do you mean? That each label has its own frame? > > On 11/6/19 5:59 PM,

[Freesurfer] Invaild Key Error for Freesurfer 5.1

2019-09-04 Thread An Lijun
or your help! -- Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mail

[Freesurfer] Invalid Key Error for Freesurfer 5.1

2019-08-29 Thread An Lijun
or your help! -- Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mail

[Freesurfer] Invalid License Key Error for Freesurfer 5.1

2019-08-26 Thread An Lijun
! --- Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Invalid license key error for Freesurfer 5.1

2019-08-25 Thread An Lijun
! -- Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer