Hello experts.
I have some question to you.
I used SurfStat statistical tool to analyze the two group(control, patient)
When i click the surf in fsaverage folder and then show up lh.pial and
lh.pial_avg.
What is the differences between lh.pial and lh.pial_avg ?
lh.pial_avg means that real subj
hello experts
i solve the problem
always thanks your reply
2016-04-30 0:18 GMT+09:00 A-reum Min :
> hi experts
>
> i have some problem using qdec
>
> when i enter the qdec and then 'Generate Stats Data Tables'
>
> show up these sentences
>
> asegst
vertices were extracted using a matlab. ( i read
lh.thickness.fsaverage.mgh)
i was wondering why vertex# 9(cortical thickness) value is zero? (fig1.png)
what is that mean? plz answer me.
2016-02-13 5:19 GMT+09:00 A-reum Min :
> hello experts
>
> i have some question to you
>
> What
ruce Fischl :
> Hi A-reum
>
> we use average Euclidean distance from gray to white and visa-versa. There
> are other (variational) techniques that we have messed around with, but
> none of our experiments have shown that they are any better, so we have
> stuck with the simplest thing.
hello experts
i have some question to you
What method do you use when measuring the cortical thickness?
(ex. Euclidean distance of a Danielsson Distance Map or 3D Eikonal
equation?)
plz answer me.
2016-01-17 0:53 GMT+09:00 A-reum Min :
> Thank you for u r answer.
>
> I have some qu
to map them
> into the fsaverage space using e.g. the -qcache switch to recon-all (or
> mri_surf2surf directly if you prefer).
>
> cheers
> Bruce
>
>
> On Sat, 16 Jan 2016, A-reum Min wrote:
>
> Hello expert.
>> I'm Areum.
>>
>> I have some question
ness value) to 1 subject(PSD) and average of PSD ?
I want to compared asymmetry of brain (lateralization). So, i really
necessary above value(cortical thickness value of vertex).
plz answer me.
Thank you.
2016-01-16 23:39 GMT+09:00 A-reum Min :
> Hello expert.
>
> I'm Areum.
>
&g
group? If you have nifti files they can be
> processed using recon-all (i.e. recon-all -i -s
> -sd -all)
>
> cheers
> Bruce
>
>
> On Tue, 29 Dec 2015, A-reum Min wrote:
>
> hello experts!my name is areum.
>> i have some question to you.i have never seen before
to control cluster size larger than default cluster
size. How can I control the cluster size?
plz reply to me
2015-08-11 11:06 GMT+09:00 A-reum Min :
> HI expert !
>
> My name is Areum. I have some question to you.
>
> 1. Does FreeSurfer offer a effect size? if that offer, how can
program results are not same. What is
differences
between two analysis program? How can I get same result while GLM and Qdec?
6. How can I get surface area and volume using GLM(group analysis program)?
plz reply to me
2015-08-10 21:35 GMT+09:00 A-reum Min :
> Hello developer~
>
> I
results are not same. What is
differences
between two analysis program? How can I get same result while GLM and Qdec?
6. How can I get surface area and volume using GLM(group analysis program)?
thanks for your help
2015-07-27 14:28 GMT+09:00 A-reum Min :
> Hello bruce
>
> I solve this p
swiki/BugReporting
> and run bugr.
>
> hth
> D
>
> On 7/26/15 5:17 PM, A-reum Min wrote:
> > Hi, Bruce
> >
> > When i use a Qdec, this message(12.png) show up..
> > How can i solve this problem?
> >
> > 2015-07-23 22:57 GMT+09:00 Bruce Fischl >
s (and even then only if you do them a
> certain way)
>
> cheers
> Bruce
>
>
> On Thu, 23 Jul 2015, A-reum Min wrote:
>
> HELLO developer
>> I have some question to you..
>>
>> 1. Every patient is given to the same number of vertex?
>>
>>
: age , Left-Lateral-Ventricle
---
which one click before analyze?
age range is 12years~24years/
all subjects are adolescent.
and no outlier in age range.. so.. age (continuous factor) does not
nasessart?
2015-05-29 1:19
: age , Left-Lateral-Ventricle
---
which one click before analyze?
2015-04-05 21:41 GMT+09:00 Bruce Fischl :
> I'm glad it worked out
>
> Bruce
> On Sun, 5 Apr 2015, A-reum Min wrote:
>
> Hello Bruce~
>
-reum
>
> the problem is that newer versions of scanner software compress dicoms and
> the version of FS you have doesn't know how to read it. So you need to
> decompress them before passing them to recon-all
>
> cheers
> Bruce
> On Sun, 5 Apr 2015, A-reum Min wrote:
>
>
can you try running
> dcmdjpeg on it to create a new (uncompressed) series and give that to
> recon-all?
>
> cheers
> Bruec
>
>
>
> On Sat, 4 Apr 2015, A-reum Min wrote:
>
> Hello developers..
>>
>> i type the recon-all -i~then show up theses
>>
22:17 GMT+09:00 Z K :
> A-reum,
>
> Unfortunately it looks like the feature you require will not be fully
> implemented until the freesurfer v6 which is tentatively scheduled for
> release in May.
>
> -Zeke
>
> On Apr 4, 2015, at 1:49 AM, A-reum Min wrote:
>
> H
root.tmp.decompressed.dcm.55srMV.dcmdjpeg.out, show up
these
dcmdjpeg.fs: error while loading shared libraries: libijg8.so.3.6: cannot
open shared object file: No such file or directory
i'm so sorry..to bother you..
2015-04-04 9:21 GMT+09:00 A-reum Min :
> hello
>
> i type the recon-all -i~
> th
hello
i type the recon-all -i~
then show up theses
++
ERROR: 32256, see /tmp/root.tmp.decompressed.dcm.XhbJG3.dcmdjpeg.out for
more details
Linux localhost.localdomain 2.6.32-504.el6.x86_64 #1 SMP Wed Oct 15
04:27:16
Hi doug... recon-all dosen't working..
If i type the recon-all -i~
then, error occured...
+
JPEG compressed, decompressing
cd /usr/local/freesurfer/subjects/PISA_FSPGR/1/subj01
dcmdjpeg.fs +te /usr/local/freesurfer/subje
; /tmp/root.tmp.decompressed.dcm.QGcfri.dcmdjpeg.out ?
>
>
> On 04/02/2015 04:53 PM, A-reum Min wrote:
> > Hi doug.
> > I try this as a test.
> > (here is a my terminal)
> >
> *
subjects path(own data) /usr/local/freesurfer/subjects/PISA_SPGR/1
-->SUBJECTS_DIR
2015-04-03 10:50 GMT+09:00 A-reum Min :
> I click the /tmp/root.tmp.decompressed.dcm.QGcfri.dcmdjpeg.out file. and
> then show up these
>
> dcmdjpeg.fs: error while loading shared libraries: li
subjects path(own data) /usr/local/freesurfer/subjects/PISA_SPGR/1
-->SUBJECTS_DIR
2015-04-03 7:02 GMT+09:00 Douglas N Greve :
> Is dcmdjpeg.fs in your path? What are the contents of the file
> /tmp/root.tmp.decompressed.dcm.QGcfri.dcmdjpeg.out ?
>
>
> On 04/02/2015 04:53 PM
hello ~
my name is areum
I have a problem in this tutorial.
The other thing(tkmedit, tksurfer) is working well but freeview dosen't
working.
If i type the freeview, then errors occured.
(freeview.bin: error while loading shared libraries: libblas.so.3: cannot
open shared object file: No such f
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