Re: [Freesurfer] mri_coreg threads parallel processing clarification

External Email - Use Caution Dear Doug and team, Thanks very much for your support. I’ve tried multiple different thread numbers between 1 and 10 with no effect. I can successfully use multithreading to accelerate other applications like mri_synthseg. I tried adding combination

Re: [Freesurfer] surfreg error: typo in mris_convert command

Thanks for reporting the bug. We have fixed it in our dev version. To locate and fix surfreg in your Freesurfer 7.4.1 environment: 1. which surfreg 2. open the surfreg reported from step #1 in a text editor, fix the bug in line 107 - change "freesurfer/subjets" should be "freesurfer/subjects" Yu

[Freesurfer] errore with tracula: eddy_openmp: Command not found.

Dear Freesurfers, I am trying to run trac-all on Freesurfer 7.4.1 but I am obtaining this output: eddy_openmp --imain=trac/R01121_SCAN/dmri/dwi_orig_las.nii.gz --mask=trac/R01121_SCAN/dmri/lowb_orig_las_brain_mask.nii.gz --bvecs=trac/R01121_SCAN/dmri/dwi_orig_las.bvecs --bvals=trac/R01121_SCAN/

[Freesurfer] surfreg error: typo in mris_convert command

External Email - Use Caution Hello, I recently updated to Freesurfer 7.4.1 (previously running 7.2.0) and am trying to get my full workflow to run. I am getting the following error when I try to run “surfreg –s test –t fsaverage_sym –lh –xhemi –no-annot”: #CMD# mris_convert --

[Freesurfer] trac-all -prep EDDY Unrealistic read-out time

External Email - Use Caution Dear TRACULA experts, I'm trying to run TRACULA for one subject (multiple scans, longitudinal) but I'm getting the following error. Is there a way to fix this? I attach the b-vals and b-vecs. eddy_openmp --imain=/home/data/dsf4b/trc/sub-F4B002_2.long.