[Freesurfer] dcmunpack: Issues with the -run argument

External Email - Use Caution Hello FreeSurfer Developers, I am trying to use dcmunpack to transform dicom images to a nifti format inside a FSFAST formatted directory ( https://secure-web.cisco.com/1JV-FemocV4fiLoKofgFHZ2hQTt_nlpR8LAqJEXvFr3d88Y9d8_5ARW5ZwWfjra1Get0gYobq4LmRSdujgu

Re: [Freesurfer] mris_label2annot

External Email - Use Caution Hi Maria, There are some assumptions to run mris_label2annot with Freesurfer 7.3.2: 1. label id 0 is reserved for Unknown, can you change your first line to ‘0 Unknown 0 0 0 0’? 2. the rest of your label ids ne

Re: [Freesurfer] mris_label2annot

External Email - Use Caution Dear Yujing, Thank you so much for your answer. My ctab looks like this: 11100 Unknown 0 0 00 11102 G_and_S_occipital_inf 0 0 00 1 G_cuneus 0 0 00 9 G_o

Re: [Freesurfer] Extracting cortical thickness values for each subject using labels

External Email - Use Caution Hi Akansha, Can you try mri_segstats with option '--slabel subject hemi full_path_to_label' - https://secure-web.cisco.com/1_6KUKydZKeVMdsBFIq45SL3FnNI0J0vK1Oc1OGxgUci9ndTV9_ZapgsK_3NzhU8bMJOJY0uIz_LMPNGNff9ofQdi41lbl_z4LOot-PyyIAOkplCuie52WEoC25283K