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I've attached a new version of dcmunpack. Try running this with
-keep-scouts and without -keep-scouts
Let me know if this runs successfully in both situations (I'm using you
as my tester:)
On 4/18/2023 10:51 AM, Proulx, Jean Sebastien wrote:
Sorry
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No, it does not affect it. The ICV is actually and *estaimated* ICV
derived from the registration of the T1 to MNI305 space, so the T2 does
not come into play.
On 4/17/2023 2:11 PM, Steven Meisler wrote:
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>
> Hi
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if you set up the data in the fsfast format, eg, subject/rest/001
subject/rest/002 etc, then it will handle it automatically
On 4/26/2023 12:30 PM, Elmira Hassanzadeh wrote:
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Hi,
How do we analyze multiple resti
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it will also handle the concatenation
On 4/26/2023 12:30 PM, Elmira Hassanzadeh wrote:
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Hi,
How do we analyze multiple resting state runs for a subject at once?
- do we need certain folder structure/naming?
- do
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Yes, this is the expected behavior, ie, it should cover only subcortical
GM regions. It is expected that cortical regions will be handled with
the surface based analysis. You can recombine the results at the end
with vlrmerge.
On 4/26/2023 12:22 PM,
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The Human Motor Control and Neuromodulation Lab under Dr. Helen Bronte-Stewart
(https://secure-web.cisco.com/1--QzHnbqbSp-JZkXqnRQUXC9NwJSM-Wjso7zaYuabDXqnLxtUXTvr-P65NynXJJ1mpEUz-HwX1EHgkMNEHEKxLLXV90UvqP32WpkSi0Ae4P7bu7-Nn3iIeIukQ8e2jjX8DZNPzk5neqGgy
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Hi,
How do we analyze multiple resting state runs for a subject at once?
- do we need certain folder structure/naming?
- do we do concatenation?
Thanks,
Elmira
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Freesurfer@nmr.mgh
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The MIDUS Affective Neuroscience Project team led by Dr. Stacey M. Schaefer at
the University of
Wisconsin-Madison’s Institute on Aging is seeking a postdoctoral scholar to
analyze and publish on data
from the national longitudinal Midlife in the US s
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Greetings team Freesurfer,
Following the instructions in your wiki page, I’m sending you to kindly provide
me with the .7z password for the said file (Freesurfer 7.2.0 release in Ubuntu
18.04.06: FS_7_2_0_Ubuntu_18_04_06.ova.7z).
Thanks a lot in ad
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Dear Amir,
We don’t have a script to make templates, but I don’t think it’d be too hard to
do it yourself. You can start from eg MNI (not a problem to start from an
existing atlas since your first iterations will be linear anyway), and use the
usual
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Hi Zhuoyuan,
Here is the tutorial page for the command-line group analysis stream in
FreeSurfer -
https://secure-web.cisco.com/1ylLNYQcRIDEjo-BaauOK-NlOPLz_YjkEDYllshDDLK_qFBAf_Z6fdFzQWuBrOxS6mElmnxEUizHxKb7Nf65zCAnVh80MD3VJoBSeOcEF3_skrs1pjOm2M5NfrE
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Dear Freesurfer users/experts,
I am working on a research project that requires generating group-average
templates from a large sample of data. I wonder about the possibility of
using mri_easyreg for generating group-average templates. To my knowledge,
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Dear experts,
I was trying to use the Qdec script that came with Freesurfer to perform
intergroup analysis of morphological data such as cortical surface area, but I
found that the Qdec tool has been removed in version 7.2.
Is there an alternative
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