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Dear FreeSurfer experts,
Is there a way to estimate the perimeter from a surface (e.g. ?h.pial) for
each slice in an automated manner at any orientation?
Thank you very much,
Fernanda Hansen P. de Moraes
fernandahmor...@gmail.com
Doutoranda em Ciênci
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Hello Art,
Sending the login and update info to your email shortly.
- R.
On Nov 29, 2021, at 12:18, art.s...@web.de
wrote:External Email - Use
CautionDear freesurfer
team, following the instructions on installing the latest freesurf
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Hello Christian,
There is a posting on the freesurfer mail list talking about in general how to
deal with freeview crashing on the Mac, but I will send it again to your email.
https://secure-web.cisco.com/1e1jc_fAfWM9bqCzlGbCbme4yrpDt-91dbT3jRnUtzP-Lhz
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Hello,
I was adapting existing code in my lab that was used for doing a volume-based
analysis, so I tried to keep the inputs the same.
Do you think removing the mask flag would be helpful?
From: freesurfer-boun...@nmr
In your mkanalysis command, why are you specifying the mask and the
funcstem? These are tricky options to get right ...
On 11/29/2021 9:50 AM, Hiersche, Kelly J. wrote:
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Hello FreeSurfer Developers,
First, I am new to using Freesurfer, so I apologize if an
External Email - Use CautionDear freesurfer team,
following the instructions on installing the latest freesurfer version on a Windows hosted VirtualBox I'm asked for a developer password on booting.
I couldn't find the password anywhere and saw in the archives that people ran i
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A quick question.
Is it feasible or even possible to edit the aseg.mgz using another program
(i.e. ITK-snap after converting to nifti), and rerunning the pipeline using the
revised aseg as input
To regenerate volumes and surfaces?
Do WM edits need
Right. Actually, I don't think it would apply the smoothing to the
annotation anyway
On 11/29/2021 10:43 AM, Daniel Westfall wrote:
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Good afternoon,
It is my understanding that if I am only interested in the already
averaged region ROIs that are output in
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Good afternoon,
It is my understanding that if I am only interested in the already averaged
region ROIs that are output in the .stats files that I should not use a
smoothing kernel as they are already averaged across all vertices, correct?
My specific
Hi Achille
I don't think any attachments came through.
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of
achille.teil...@chu-lyon.fr
Sent: Monday, November 29, 2021 2:40 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Visualization error in freeview from recon
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Hello FreeSurfer Developers,
First, I am new to using Freesurfer, so I apologize if any information is
unclear.
I am attempting to use the following tutorial
https://secure-web.cisco.com/1i0LcvXc_pWxYrG0y8LzlZO7IfvmC_UpV6cd9EBpLiYz691LC8ZZxenFAFLThZ
Can you send them in plain, unzipped format?
On 11/29/2021 4:07 AM, Nilab Nasrullah wrote:
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I am attaching a few screenshots of the segmented brain as zip-files.
Hopefully, you can see the results. If not, let me know so I can send
it to you in a different
sorry, no picture attached. Can you resend?
On 11/29/2021 2:40 AM, achille.teil...@chu-lyon.fr wrote:
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Dear experts,
We are working with a large MRI dataset (FLAIR, T1) and we are
performing recon-all based on the 3D T1. At the end, no error is
detected b
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