Hi Achille
I don't think any attachments came through.
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of
achille.teil...@chu-lyon.fr
Sent: Monday, November 29, 2021 2:40 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Visualization error in freeview from recon-all
External Email - Use Caution
Dear experts,
We are working with a large MRI dataset (FLAIR, T1) and we are performing
recon-all based on the 3D T1. At the end, no error is detected but the
visualization of the pial, white and inflated surfaces in freeview is somehow
bad as you can see on the picture attached (lh.pial_freeview,
lh.white_freeview, lh.inflated_freeview). Can it be an error that I missed and
is there a way to correct it ? Or could it be a 3D rendering issue that can be
fixed with visualization options ? Oddly, when I zoom really close for all
surfaces, it seems perfectly smoothed... I thought first it could be linked to
the topological defect correction (which I didn't do) but when I display the
surfaces with paraview it works fine as you can also see on the picture
attached (lh.pial_paraview, lh.white_paraview, lh.inflated_paraview).
Everything works fine otherwise.
Thanks in advance for any help you may provide and I can send you some
screenshots highlightening the issue or the recon-all log.
Best,
Achille Teillac
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