Re: [Freesurfer] PETsurfer

2021-11-03 Thread Brusaferri, Ludovica
Great! Thanks SO much. Kindly, Ludovica On Nov 3, 2021, at 20:43, Adam Martersteck wrote:  External Email - Use Caution PETsurfer wasn't released until the v6.0.0 stable build. You can see it in the release notes here: MailScanner has detected a possible fraud attempt from "secur

Re: [Freesurfer] PETsurfer

2021-11-03 Thread Adam Martersteck
External Email - Use Caution PETsurfer wasn't released until the v6.0.0 stable build. You can see it in the release notes here: https://secure-web.cisco.com/1n9uot8CDL1X4zb4xQXVdkvdqbv2ngmmjy0xI-YpaJo1tCft8AUJ0fOq2tnIi9H-neObzRYbNnzQ_f-6Te5NpdO_gdoIcUF7wBpGrIgl62EZEaig2VymVFjCNARkn

[Freesurfer] Senior Research Assistant/Lab Manager position

2021-11-03 Thread Illapani, Venkata Sita Priyanka (Priyanka)
External Email - Use Caution The Center for Prevention of Neurodevelopmental Disorders (CPND) at Cincinnati Children's Hospital Medical Center is recruiting Senior Research Assistant/Lab Manager with interest and experience in diffusion and functional brain MRI data acquisition

[Freesurfer] Clinical Neuroimaging Postdoctoral Fellow position in the Parikh Lab at Cincinnati Children’s

2021-11-03 Thread Illapani, Venkata Sita Priyanka (Priyanka)
External Email - Use Caution The Center for Prevention of Neurodevelopmental Disorders (CPND) at Cincinnati Children’s Hospital Medical Center is recruiting Clinical Neuroimaging Postdoc with interest and experience in diffusion and functional brain MRI data acquisition and proc

Re: [Freesurfer] tksurfer

2021-11-03 Thread Fischl, Bruce
Hi Arian Tksurfer has been deprecated for a long time. Can you try freeview instead? Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Arian Klows Sent: Wednesday, November 3, 2021 1:07 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] tksurfer External Email -

[Freesurfer] tksurfer

2021-11-03 Thread Arian Klows
External Email - Use Caution Hi experts, I recently downloaded the freesurfer and am testing it. I tried tksurfer, but the editor window is blank. Please see below. Can anyone please help me in resolving this issue!? [image: image.png] Is this an internal problem with my comput

Re: [Freesurfer] PETsurfer

2021-11-03 Thread Brusaferri, Ludovica
Hi! Thanks a lot. I have freesurfer 5.3.0 installed. If I type on the terminal commands such as tkregister it works , but if I try PETsurfer commands I have errors such as "mri_gtmpvc: Command not found”. Any idea? Thank you, Ludovica > On Nov 3, 2021, at 10:05, Douglas N. Greve wrote: > > T

Re: [Freesurfer] mri_label2label issues

2021-11-03 Thread Trisanna Sprung-Much
External Email - Use Caution Hi Doug I did and I responded with the following: that is correct Doug - the 2nd recon-all batch had a better set of scans (intensity wise). For some reason the T1.mgz volumes are slightly translated from one another, as are the surfaces (in that im

Re: [Freesurfer] surface labels to volume masks in MNI space

2021-11-03 Thread Douglas N. Greve
So you want to map the labels in fsaverage into MNI152 volumes pace, right? After mris_divide_parcellation, you should have a parcellation in fsaverage space. Use mri_surf2surf (or mris_apply_reg) to map that into the MNI152 that you ran recon-all on. Look in the recon-all.log file for the comm

Re: [Freesurfer] mri_label2label issues

2021-11-03 Thread Douglas N. Greve
Did you see this response from a few days ago? On 10/27/2021 11:26 AM, Douglas N. Greve wrote: I'm not sure what you did or how to interpret that pic. If I understand, you ran a case through recon-all and created labels on that case. You then recon-all again using a totally different output wh

Re: [Freesurfer] PETsurfer

2021-11-03 Thread Douglas N. Greve
There is nothing special you have to do. What version of FS do you have? You still have to source the FS environment. If you can run recon-all, you should be able to run PETsurfer On 11/1/2021 12:26 PM, Brusaferri, Ludovica wrote: Hi! I have been using freesurfer regularly and I am now trying

[Freesurfer] Postdoc Position

2021-11-03 Thread Didenur Sahin
External Email - Use Caution Dear All, Brain Development And Psychosis Lab, is pleased to announce the opening of a postdoctoral fellowship position in clinical neuroscience and cognitive neuroimaging. Please take a look at the advertisement below. Best, Didenur Sahin *ANNOUNC

[Freesurfer] surface labels to volume masks in MNI space

2021-11-03 Thread Alvarado,Luis R
External Email - Use Caution Hi all, I am having a bit of a hard time figuring out the best option to convert surface labels to mni volume masks. For my ROI FS analysis, I divided the fsaverage S1 and M1 labels into 5 sub-labels using mris_divide_parcellation. I then used mri_l